Table 1.
Summary of studied loci and genes
| Original data | ||||
|---|---|---|---|---|
| Chromosome | Before Filtering | After Filtering | ||
| SNPs | gene | SNPs | gene | |
| 1 | 9819 | 1606 | 8541 | 1530 |
| 2 | 8702 | 1055 | 7718 | 1030 |
| 3 | 7207 | 891 | 6401 | 861 |
| 4 | 6000 | 649 | 5392 | 626 |
| 5 | 6329 | 738 | 5644 | 712 |
| 6 | 6579 | 858 | 5890 | 832 |
| 7 | 5581 | 730 | 4941 | 708 |
| 8 | 4891 | 559 | 4334 | 541 |
| 9 | 4480 | 601 | 3989 | 581 |
| 10 | 5240 | 614 | 4571 | 593 |
| 11 | 5928 | 1050 | 5310 | 1000 |
| 12 | 5465 | 881 | 4781 | 847 |
| 13 | 3093 | 288 | 2794 | 285 |
| 14 | 3420 | 501 | 3013 | 481 |
| 15 | 3307 | 477 | 2928 | 463 |
| 16 | 3388 | 624 | 2909 | 586 |
| 17 | 4079 | 896 | 3584 | 858 |
| 18 | 2570 | 236 | 2260 | 234 |
| 19 | 3520 | 1058 | 3157 | 1001 |
| 20 | 3007 | 477 | 2572 | 446 |
| 21 | 1381 | 218 | 1267 | 213 |
| 22 | 1886 | 358 | 1629 | 345 |
| X | 3480 | 598 | 2648 | 530 |
| Total | 109352 | 15963 | 96273 | 15303 |
Summary of all studied loci and genes in each chromosome before filtering of the data as well as the numbers of loci and genes showing disparity in both minor allele (AA) and major allele (BB) after removing the non-polymorphic or non-informative loci.