Table 1.
HMMER | RAPTOR | HHPred | SMURF-Lite 1 | SMURF-Lite 1, SimEv | SMURF-Lite 2 | SMURF-Lite 2, SimEv | SMURF-Lite 3 | SMURF-Lite 3, SimEv | |
---|---|---|---|---|---|---|---|---|---|
5-bladed | – | – | – | 0.75 | 0.89 | 0.73 | 0.89 | 0.73 | 0.89 |
6-bladed | 0.82 | 0.82 | 0.88 | 0.92 | 0.93 | 0.96 | 0.95 | 0.96 | 0.96 |
7-bladed | 0.89 | 0.95 | 0.99 | 0.92 | 0.91 | 0.93 | 0.91 | 0.93 | 0.91 |
8-bladed | – | 0.64 | 0.99 | 0.99 | 0.99 | 0.99 | 0.99 | 0.99 | 0.99 |
Note: for SmurfLite, the number (1,2,3) indicates the interleave threshold, and SimEv is simulated evolution. A dash (‘–’) in a result entry indicates the method failed on these structures, i.e. an AUC of <0.6.