Table 5. Summary for ciliary candidates supported by the Protein Atlas data.
| Symbol | Novelty category | Number of datasets in which the gene belongs to the ciliary module | Validation | |
| Tissue specificity (P-value) | Protein Atlas | |||
| ACYP1 | III | 5 | 1.0E-06 | Class B (Mixed localization) |
| ARMC2 | III | 8 | 1.7E-06 | Class A (Cilia) |
| BAIAP3 | III | 4 | NS | Class A (Cilia) |
| C1orf87 | II | 9 | 1.0E-06 | Class A (Cilia) |
| C1orf92 | III | 6 | 1.0E-06 | Class A (Cilia) |
| C1orf129 | III | 4 | NS | Class B (Apical cytoplasm) |
| C1orf222 | II | 4 | NS | Class A (Cilia) |
| C6orf103 | II | 5 | 1.0E-06 | Class B (Mixed localization) |
| C9orf9 | II | 4 | 1.1E-03 | Class A (Cilia) |
| C10orf92 | III | 6 | 8.2E-06 | Class A (Cilia) |
| C11orf63 | III | 4 | 1.7E-06 | Class A (Cilia) |
| C11orf66 | II | 5 | NS | Class A (Cilia) |
| C14orf179 | II | 4 | 1.0E-06 | Class A (Cilia) |
| C21orf58 | III | 7 | 1.0E-06 | Class A (Cilia) |
| C22orf23 | III | 7 | NS | Class A (Cilia) |
| CCDC89 | III | 5 | 1.6E-05 | Class A (Cilia) |
| CIB1 | III | 4 | 1.0E-06 | Class A (Cilia) |
| DCDC5 | III | 4 | 1.0E-06 | Class B (Apical cytoplasm) |
| DZIP3 | II | 6 | 1.1E-05 | Class A (Cilia) |
| FANK1 | II | 9 | 1.0E-06 | Class B (Cilia & cytoplasm) |
| FLJ16686 | III | 4 | 2.7E-04 | Class B (Apical cytoplasm) |
| FSD1L | II | 4 | NS | Class A (Cilia) |
| IQCK | III | 6 | 1.0E-06 | Class A (Cilia) |
| KIAA0319 | III | 5 | NS | Class A (Cilia) |
| KCNRG | II | 6 | 1.0E-06 | Class A (Cilia) |
| LPAR3 | III | 5 | 1.0E-06 | Class A (Cilia) |
| LRGUK | III | 6 | 5.0E-06 | Class A (Cilia) |
| LRP2BP | II | 7 | 7.9E-05 | Class A (Cilia) |
| LRRC6 | II | 6 | 1.0E-06 | Class B (Mixed localization) |
| LRRC18 | III | 6 | 7.8E-05 | Class A (Cilia) |
| LRRIQ3 | III | 4 | 6.3E-04 | Class A (Cilia) |
| MIPEP | II | 5 | 3.6E-02 | Class A (Cilia) |
| NEK10 | II | 5 | 1.9E-02 | Class B (Mixed localization) |
| NUP62CL | III | 7 | 1.0E-06 | Class A (Cilia) |
| PLCH1 | II | 4 | 1.7E-06 | Class A (Cilia) |
| PPM1E | III | 6 | NS | Class A (Cilia) |
| PPP1R16A | II | 4 | 3.1E-02 | Class B (Apical cytoplasm) |
| RBKS | II | 4 | 1.2E-04 | Class B (Cilia & cytoplasm) |
| RBM20 | III | 4 | NS | Class A (Cilia) |
| RGS22 | III | 8 | 1.0E-06 | Class A (Cilia) |
| SPAG17 | II | 7 | 1.0E-06 | Class A (Cilia) |
| SPATA18 | II | 10 | 1.0E-06 | Class B (Apical cytoplasm) |
| SYTL3 | III | 4 | 7.6E-04 | Class B (Apical cytoplasm) |
| UBXN10 | II | 8 | 1.0E-06 | Class A (Cilia) |
| UFC1 | III | 5 | 1.0E-06 | Class A (Cilia) |
| WDR49 | II | 9 | 8.5E-05 | Class B (Apical cytoplasm) |
The table includes 46 signature genes that belong to the novelty categories II or III (proteins with weak or no evidence from the previous studies, respectively) and are supported as cilia-related by the Human Protein Atlas data. Summary for all the signature genes is provided in the Table S10. ‘NS’ – non-significant.