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. 2012 Apr 26;7(4):e36178. doi: 10.1371/journal.pone.0036178

Table 2. Measures of genetic diversity and divergence for 15 population and three groups based on haplotype frequencies using CONTRIB 1.02 (see Table 1 for site and group abbreviations).

Samplesize Nb Hap h ho r(13) DHs DHt DGst Ct Cs Cd Cr t Cr s Cr d
Population levels
CW 32 4 0.181 0.090 1.219 0.207 0.211 0.018 −0.017 −0.014 −0.003 −0.111 −0.004 −0.106
DG 30 5 0.515 0.089 2.290 0.362 0.404 0.104 0.108 0.086 0.022 −0.008 0.046 −0.054
DS 32 2 0.063 0.058 0.406 0.152 0.160 0.056 −0.05 −0.050 0.000 −0.155 −0.042 −0.113
SS 15 3 0.257 0.142 1.733 0.242 0.242 0.002 0.003 0.009 −0.005 −0.062 0.02 −0.081
ZS 52 5 0.184 0.072 1.191 0.208 0.213 0.022 −0.016 −0.013 −0.002 −0.106 −0.006 −0.100
NJ 30 5 0.253 0.104 1.733 0.24 0.242 0.010 0.003 0.007 −0.004 −0.085 0.02 −0.105
NR 32 4 0.181 0.09 1.219 0.207 0.211 0.018 −0.017 −0.014 −0.003 −0.111 −0.004 −0.106
HK 30 3 0.131 0.082 0.867 0.183 0.189 0.029 −0.031 −0.029 −0.002 −0.127 −0.021 −0.106
WZ 14 2 0.143 0.119 0.929 0.189 0.193 0.020 −0.029 −0.026 −0.003 −0.098 −0.018 −0.080
XM 32 5 0.238 0.099 1.625 0.233 0.236 0.013 −0.001 0.003 −0.003 −0.087 0.015 −0.102
SZ 14 2 0.264 0.136 1.000 0.245 0.250 0.021 0.008 0.011 −0.002 −0.062 −0.015 −0.047
MZ 24 4 0.239 0.113 1.625 0.234 0.236 0.009 −0.001 0.003 −0.004 −0.09 0.015 −0.105
PT 29 3 0.135 0.085 0.897 0.185 0.190 0.026 −0.030 −0.028 −0.002 −0.126 −0.019 −0.106
QD 21 3 0.452 0.105 1.616 0.333 0.364 0.087 0.082 0.067 0.015 −0.028 0.014 −0.042
NA 30 4 0.193 0.095 1.300 0.212 0.216 0.016 −0.014 −0.011 −0.003 −0.106 0.000 −0.105
Group level
YS group 51 5 0.481 0.068 3.619 0.344 0.388 0.115 0.372 0.279 0.093 −0.004 −0.029 0.025
ECS group 295 25 0.193 0.031 4.135 0.272 0.295 0.077 −0.201 −0.160 −0.041 0.035 0.025 0.010
SCS group 43 5 0.220 0.083 3.930 0.279 0.300 0.070 −0.170 −0.119 −0.052 −0.104 0.004 −0.108