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. 1992 May 11;20(Suppl):2119–2144. doi: 10.1093/nar/20.suppl.2119

Compilation of DNA sequences of Escherichia coli (update 1992)

Manfred Kröger 1, Ralf Wahl 1, Gabriel Schachtel 1, Peter Rice 2
PMCID: PMC333988  PMID: 1598239

Abstract

We have compiled the DNA sequence data for E.coli available from the GENBANK and EMBL data libraries and over a period of several years independently from the literature. This is the fourth listing replacing and increasing the former listings substantially. However, in order to save space this printed version contains DNA sequence information only, if they are publically available in electronic form. The complete compilation including a full set of genetic map data and the E.coli protein index can be obtained in machine readable form from the EMBL data library (ECD release 10) or from the CD-ROM version of this supplement issue directly. After deletion of all detected overlaps a total of 1 820 237 individual bp is found to be determined till the beginning of 1992. This corresponds to a total of 38.56% of the entire E.coli chromosome consisting of about 4,720 kbp. This number may actually be higher by some extra 2,5% derived from lysogenic bacteriophage lambda and various DNA sequences already received for other strains of E.coli.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bachmann B. J. Linkage map of Escherichia coli K-12, edition 8. Microbiol Rev. 1990 Jun;54(2):130–197. doi: 10.1128/mr.54.2.130-197.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Birkenbihl R. P., Vielmetter W. Complete maps of IS1, IS2, IS3, IS4, IS5, IS30 and IS150 locations in Escherichia coli K12. Mol Gen Genet. 1989 Dec;220(1):147–153. doi: 10.1007/BF00260869. [DOI] [PubMed] [Google Scholar]
  3. Birkenbihl R. P., Vielmetter W. Cosmid-derived map of E. coli strain BHB2600 in comparison to the map of strain W3110. Nucleic Acids Res. 1989 Jul 11;17(13):5057–5069. doi: 10.1093/nar/17.13.5057. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Knott V., Blake D. J., Brownlee G. G. Completion of the detailed restriction map of the E. coli genome by the isolation of overlapping cosmid clones. Nucleic Acids Res. 1989 Aug 11;17(15):5901–5912. doi: 10.1093/nar/17.15.5901. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Kohara Y., Akiyama K., Isono K. The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell. 1987 Jul 31;50(3):495–508. doi: 10.1016/0092-8674(87)90503-4. [DOI] [PubMed] [Google Scholar]
  6. Kröger M. Compilation of DNA sequences of Escherichia coli. Nucleic Acids Res. 1989;17 (Suppl):r283–r309. doi: 10.1093/nar/17.suppl.r283. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Kröger M., Wahl R., Rice P. Compilation of DNA sequences of Escherichia coli (update 1990). Nucleic Acids Res. 1990 Apr 25;18 (Suppl):2549–2587. doi: 10.1093/nar/18.suppl.2549. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Kröger M., Wahl R., Rice P. Compilation of DNA sequences of Escherichia coli (update 1991). Nucleic Acids Res. 1991 Apr 25;19 (Suppl):2023–2043. doi: 10.1093/nar/19.suppl.2023. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Kunisawa T., Nakamura M., Watanabe H., Otsuka J., Tsugita A., Yeh L. S., George D. G., Barker W. C. Escherichia coli K12 genomic database. Protein Seq Data Anal. 1990 Jun;3(2):157–162. [PubMed] [Google Scholar]
  10. McClelland M., Bhagwat A. S. Biased DNA repair. Nature. 1992 Feb 13;355(6361):595–596. doi: 10.1038/355595b0. [DOI] [PubMed] [Google Scholar]
  11. Merkl R., Kröger M., Rice P., Fritz H. J. Statistical evaluation and biological interpretation of non-random abundance in the E. coli K-12 genome of tetra- and pentanucleotide sequences related to VSP DNA mismatch repair. Nucleic Acids Res. 1992 Apr 11;20(7):1657–1662. doi: 10.1093/nar/20.7.1657. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Médigue C., Bouché J. P., Hénaut A., Danchin A. Mapping of sequenced genes (700 kbp) in the restriction map of the Escherichia coli chromosome. Mol Microbiol. 1990 Feb;4(2):169–187. doi: 10.1111/j.1365-2958.1990.tb00585.x. [DOI] [PubMed] [Google Scholar]
  13. Médigue C., Hénaut A., Danchin A. Escherichia coli molecular genetic map (1000 kbp): update I. Mol Microbiol. 1990 Sep;4(9):1443–1454. [PubMed] [Google Scholar]
  14. Médigue C., Viari A., Hénaut A., Danchin A. Escherichia coli molecular genetic map (1500 kbp): update II. Mol Microbiol. 1991 Nov;5(11):2629–2640. doi: 10.1111/j.1365-2958.1991.tb01972.x. [DOI] [PubMed] [Google Scholar]
  15. Rudd K. E., Miller W., Ostell J., Benson D. A. Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map. Nucleic Acids Res. 1990 Jan 25;18(2):313–321. doi: 10.1093/nar/18.2.313. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Sprinzl M., Dank N., Nock S., Schön A. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 1991 Apr 25;19 (Suppl):2127–2171. doi: 10.1093/nar/19.suppl.2127. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Stoehr P. J., Omond R. A. The EMBL Network File Server. Nucleic Acids Res. 1989 Aug 25;17(16):6763–6764. doi: 10.1093/nar/17.16.6763. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Umeda M., Ohtsubo E. Mapping of insertion elements IS1, IS2 and IS3 on the Escherichia coli K-12 chromosome. Role of the insertion elements in formation of Hfrs and F' factors and in rearrangement of bacterial chromosomes. J Mol Biol. 1989 Aug 20;208(4):601–614. doi: 10.1016/0022-2836(89)90151-4. [DOI] [PubMed] [Google Scholar]
  19. VanBogelen R. A., Neidhardt F. C. The gene-protein database of Escherichia coli: edition 4. Electrophoresis. 1991 Nov;12(11):955–994. doi: 10.1002/elps.1150121114. [DOI] [PubMed] [Google Scholar]
  20. Watanabe H., Kunisawa T. Computer-assisted analysis of chromosomal locations and transcriptional directions of Escherichia coli genes. Protein Seq Data Anal. 1990 Jun;3(2):149–156. [PubMed] [Google Scholar]

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