Table 1.
BvRAV1-like transcript locus together with associated negatively regulated transcript locus IDs together with their best matched homologous Arabidopsis gene loci and their annotations
| Transcript locus ID | Arabidopsis locus ID | BLASTX p-values | Arabidopsis locus annotations |
|---|---|---|---|
| 29609 | AT1G13260.1 | 4 × 10-60 | RAV1, EDF4 | related to ABI3/VP1 1 | chr1:4542386-4543420 FORWARD LENGTH = 344 |
| 1313 | AT5G63660.1 | 1 × 10-25 | LCR74, PDF2.5 | Scorpion toxin-like knottin superfamily protein | chr5:25485692-25486062 FORWARD LENGTH = 73 |
| 5840 | AT2G45640.1 | 5 × 10-45 | SAP18, ATSAP18 | SIN3 associated polypeptide P18 | chr2:18799881-18801323 REVERSE LENGTH = 152 |
| 2345 | AT3G42170.1 | 4 × 10-60 | BED zinc finger;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH = 696 |
| 14853 | AT3G58690.1 | 8 × 10-145 | Protein kinase superfamily protein | chr3:21709369-21711246 FORWARD LENGTH = 400 |
| 14886 | AT1G80480.1 | 1 × 10-54 | PTAC17 | plastid transcriptionally active 17 | chr1:30258272-30260570 REVERSE LENGTH = 444 |
| 25243 | AT5G63090.2 | 6 × 10-59 | LOB | Lateral organ boundaries (LOB) domain family protein | chr5:25308723-25309283 REVERSE LENGTH = 186 |
| 2141 | AT5G14450.1 | 2 × 10-89 | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:4658488-4660034 FORWARD LENGTH = 389 |
| 18419 | AT5G19300.1 | 6 × 10-119 | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). | chr5:6495593-6497987 FORWARD LENGTH = 398 |
| 12175 | AT1G69830.1 | 5 × 10-172 | ATAMY3, AMY3 | alpha-amylase-like 3 | chr1:26288518-26293003 REVERSE LENGTH = 887 |
| 98654 | AT1G16070.2 | 2 × 10-106 | AtTLP8, TLP8 | tubby like protein 8 | chr1:5511899-5513779 REVERSE LENGTH = 398 |
| 32761 | AT1G56580.1 | 8 × 10-41 | SVB | Protein of unknown function, DUF538 | chr1:21198402-21198902 REVERSE LENGTH = 166 |
| 27453 | AT5G61800.1 | 3 × 10-67 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24830054-24831553 REVERSE LENGTH = 499 |
| 6330 | AT4G25720.1 | 1 × 10-19 | ATQC, QC, QCT | glutaminyl cyclase | chr4:13099929-13102470 REVERSE LENGTH = 320 |
| 19953 | AT1G64570.1 | 5 × 10-10 | DUO3 | Homeodomain-like superfamily protein | chr1:23978868-23983925 FORWARD LENGTH = 1239 |
| 12524 | AT5G59310.1 | 2 × 10-27 | LTP4 | lipid transfer protein 4 | chr5:23925296-23925772 REVERSE LENGTH = 112 |
| 17933 | AT4G26000.1 | 9 × 10-104 | PEP | RNA-binding KH domain-containing protein | chr4:13197280-13199539 FORWARD LENGTH = 495 |
| 269 | AT5G23850.1 | 0 | Arabidopsis thaliana protein of unknown function (DUF821) | chr5:8038126-8040741 FORWARD LENGTH = 542 |
| 24056 | AT2G26680.1 | 3 × 10-100 | CONTAINS InterPro DOMAIN/s: Methyltransferase FkbM (InterPro:IPR006342); Has 1073 Blast hits to 1073 proteins in 243 species: Archae - 45; Bacteria - 509; Metazoa - 0; Fungi - 4; Plants - 60; Viruses - 4; Other Eukaryotes - 451 (source: NCBI BLink). | chr2:11344003-11345288 REVERSE LENGTH = 319 |
| 6070 | AT3G28910.1 | 3 × 10-84 | ATMYB30, MYB30 | myb domain protein 30 | chr3:10911443-10912856 FORWARD LENGTH = 323 |
| 24826 | AT3G07800.1 | 2 × 10-85 | Thymidine kinase | chr3:2489944-2490935 REVERSE LENGTH = 238 |