Table 2.
Gene ontology terms enriched for the 18 gene set validated for analysis using AraNet
| Locus_ID | Gene Symbol | GO Plant terms | GO Cellular terms | GO Function terms |
|---|---|---|---|---|
| AT4G26000 | na | shoot development; gynoecium development; | Na | nucleic acid binding; |
| AT3G07800 | na | Na | Na | thymidine kinase activity; |
| AT1G56580 | na | Na | Na | Na |
| AT5G23850 | na | Na | Na | Na |
| AT5G14450 | na | lipid metabolic process; | cellulose and pectin-containing cell wall; | carboxylic ester hydrolase activity; |
| AT5G19300 | na | Na | Na | na |
| AT2G45640 | na | response to salt stress; response to abscisic acid stimulus; | mitochondrion; | protein binding; transcription regulator activity; |
| AT1G80480 | na | Na | plastid chromosome; | na |
| AT5G59310 | LTP4 | lipid transport; response to abscisic acid stimulus; | endomembrane system; | lipid binding; |
| AT5G63090 | LOB | organ boundary specification between lateral organs and the meristem; | chloroplast; | na |
| AT1G69830 | na | starch catabolic process; | chloroplast; | alpha-amylase activity; |
| AT3G28910 | MYB30 | response to bacterium; hypersensitive response; response to salt stress; response to ethylene stimulus; response to auxin stimulus; response to abscisic acid stimulus; response to gibberellin stimulus; response to salicylic acid stimulus; response to jasmonic acid stimulus; response to cadmium ion; | nucleus; | DNA binding; transcription factor activity; |
| AT5G63660 | na | defense response; | endomembrane system; | na |
| AT4G25720 | na | Na | mitochondrion; | catalytic activity; |
| AT1G16070 | na | regulation of transcription; | Na | transcription factor activity; |
| AT2G26680 | na | Na | endomembrane system; | na |
| AT1G13260 | RAV1 | regulation of transcription, DNA-dependent; response to brassinosteroid stimulus; negative regulation of flower development; leaf development; lateral root development; | nucleus; | DNA binding; transcription factor activity; |
| AT3G58690 | na | protein amino acid phosphorylation; | endomembrane system; | kinase activity; |
Na = not available.
Underlined gene loci are connected in the extended regulatory network illustrated in Figure 6. See also the GO analysis data in Additional file 6