Table 3.

Plant ontology terms enriched for 20 query genes (excluding RAV1) and top 200 new candidates revealed in AraNet.

Rank	ID	Description	p-value	Adjusted p-value	N	m	n	k
1	PO:0007095	LP.08 eight leaves visible	8.88 × 10-22	3.28 × 10-19	27029	220	12122	168
2	PO:0009052	Pedicel	1.85 × 10-21	3.42 × 10-19	27029	220	13566	178
3	PO:0007098	LP.02 two leaves visible	4.03 × 10-21	4.96 × 0-19	27029	220	12268	168
4	PO:0009006	Shoot	9.21 × 10-21	8.50 × 10-19	27029	220	12752	171
5	PO:0020030	Cotyledon	2.23 × 10-20	1.37 × 10-18	27029	220	12304	167
6	PO:0008019	leaf lamina base	2.46 × 10-20	1.37 × 10-18	27029	220	12580	169
7	PO:0001078	E expanded cotyledon stage	2.78 × 10-20	1.37 × 10-18	27029	220	13839	178
8	PO:0001185	C globular stage	2.99 × 10-20	1.37 × 10-18	27029	220	13704	177
9	PO:0000013	cauline leaf	3.47 × 10-20	1.37 × 10-18	27029	220	12885	171
10	PO:0004507	D bilateral stage	3.71 × 10-20	1.37 × 10-18	27029	220	13726	177
11	PO:0007115	LP.04 four leaves visible	5.20 × 10-20	1.74 × 10-18	27029	220	13619	176
12	PO:0020038	Petiole	6.00 × 10-20	1.85 × 10-18	27029	220	12403	167
13	PO:0001054	4 leaf senescence stage	7.76 × 10-20	2.20 × 10-18	27029	220	12831	170
14	PO:0001081	F mature embryo stage	1.05 × 10-19	2.76 × 10-18	27029	220	13272	173
15	PO:0009010	Seed	1.42 × 10-19	3.50 × 10-18	27029	220	14008	178
16	PO:0020137	leaf apex	2.38 × 10-19	5.50 × 10-18	27029	220	12811	169
17	PO:0007103	LP.10 ten leaves visible	3.94 × 10-19	8.55 × 10-18	27029	220	12595	167
18	PO:0009009	Embryo	5.61 × 10-19	1.06 × 10-17	27029	220	14737	182
19	PO:0007064	LP.12 twelve leaves visible	5.64 × 10-19	1.06 × 10-17	27029	220	12106	163
20	PO:0007123	LP.06 six leaves visible	5.72 × 10-19	1.06 × 10-17	27029	220	12501	166
21	PO:0009032	Petal	6.26 × 10-19	1.10 × 10-17	27029	220	14601	181
22	PO:0009025	Leaf	1.48 × 10-18	2.49 × 10-17	27029	220	14991	183
23	PO:0000230	inflorescence meristem	3.71 × 10-18	5.96 × 10-17	27029	220	12965	168
24	PO:0009047	Stem	9.59 × 10-18	1.48 × 10-16	27029	220	14033	175
25	PO:0020100	Hypocotyls	2.22 × 10-17	3.28 × 10-16	27029	220	14126	175
26	PO:0000037	shoot apex	9.61 × 10-17	1.36 × 10-15	27029	220	14291	175
27	PO:0009029	Stamen	1.23 × 10-16	1.68 × 10-15	27029	220	13898	172
28	PO:0009031	Sepal	1.89 × 10-16	2.49 × 10-15	27029	220	15385	182
29	PO:0008034	leaf whorl	2.07 × 10-16	2.63 × 10-15	27029	220	15696	184
30	PO:0007611	petal differentiation and expansion stage	1.70 × 10-15	2.09 × 10-14	27029	220	16404	187
31	PO:0009005	Root	1.78 × 10-15	2.12 × 10-14	27029	220	14917	177
32	PO:0009046	Flower	6.43 × 10-15	7.42 × 10-14	27029	220	16565	187
33	PO:0007616	4 anthesis	8.20 × 10-15	9.17 × 10-14	27029	220	16135	184
34	PO:0009030	Carpel	9.14 × 10-14	9.92 × 10-13	27029	220	13867	166
35	PO:0020091	male gametophyte	2.77 × 10-10	2.92 × 10-09	27029	220	12609	148
36	PO:0000293	guard cell	1.10 × 10-06	1.13 × 10-05	27029	220	1815	35
37	PO:0000084	sperm cell	1.35 × 10-05	0.000135	27029	220	5341	69
38	PO:0020092	female gametophyte	0.000703	0.006825	27029	220	22	3
39	PO:0007131	seedling growth	0.001218	0.01152	27029	220	862	16

A total of 39 out of 369 terms were enriched by adjusted p value < 0.05

Description of columns: [Rank] [ID] [Description] [p-value (by Hypergeometric test)] [Adjusted p-value (by False discovery rate)] [N = # of total Arabidopsis genes] [m = # of query genes] [n = # of genes for the PO term] [k = # of genes for intersection between m and n]