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. 2012 Apr 30;7(4):e36456. doi: 10.1371/journal.pone.0036456

Figure 2. Detection of shared and different pseudogenes between strains of A. marginale.

Figure 2

Top panel: Mosaik alignment of sequencing reads from the StM strain with the FL strain as reference; left is nonamplified StM genomic DNA, right is amplified St. Maries genomic DNA (the region of the FL strain encoding the msp2/msp3 gene pair AMF_047/AMF_1097 is shown). Lower panel: alignment of reads over the msp2/msp3 gene pair AMF_1018/AMF_1019. The lack of corresponding genes in the St. Maries strain is revealed by gaps in coverage.