Table 1. Genomic sequencing statistics.
Original genome size | 1,202,435 | 1,197,687 | 1,471,282 | |||
FL | FL amp | SM | SM amp | HZ | HZ amp | |
Read Statistics | ||||||
Total reads | 35,670 | 468,695 | 63,260 | 278,066 | 88,420 | 272,709 |
Total mapped reads | 35,233 | 455,532 | 62,271 | 273,539 | 79,133 | 257,105 |
Total bases | 11,889,078 | 203,308,320 | 27,918,683 | 83,943,863 | 37,509,146 | 73,390,330 |
Total mapped bases | 11,779,891 | 190,652,533 | 27,394,291 | 78,642,875 | 33,885,705 | 64,189,292 |
Contig>500 bp Statistics | ||||||
Number of contigs | 65 | 20 | 31 | 24 | 56 | 61 |
N50 contig size | 27,393 | 72,652 | 60,895 | 114,814 | 47,931 | 47,757 |
Average contig size | 18,199 | 59,659 | 38,393 | 49,560 | 25,657 | 23,414 |
Largest contig | 63,808 | 271,598 | 142,576 | 209,761 | 99,143 | 106,111 |
Number of bases | 1,182,958 | 1,193,196 | 1,190,200 | 1,189,443 | 1,436,840 | 1,428,294 |
Q40+ bases | 1,157,026 | 1,192,198 | 1,186,779 | 1,186,691 | 1,431,402 | 1,419,016 |