Table 4. PCR conditions for Sanger sequencing and ASLNAqPCR.
Sanger Sequencing | |||
Amplicon | Temperature | Time | Cycles |
BRAF (Ex15) | 95°C | 4′ | 1 |
95°C | 30″ | 40 | |
53°C | 30″ | 40 | |
72°C | 30″ | 40 | |
72°C | 10′ | 1 | |
KRAS (Ex2 and Ex3)a | 95°C | 4′ | 1 |
95°C | 30′ | 5 | |
63°C–1°C/cycle | 30′ | 5 | |
72°C | 30″ | 5 | |
95°C | 30″ | 35 | |
58°C | 30″ | 35 | |
72°C | 30″ | 35 | |
72°C | 10′ | 1 |
Ex, exon; aFor KRAS amplification a touch-down PCR was performed; bPCR for wild type KRAS and all 7 codon 12 and 13 mutations; cPCR for wild type BRAF and BRAF V600E; *Plate reading step.