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. 2001 May 8;98(11):5961–5964. doi: 10.1073/pnas.101516298

Figure 3.

Figure 3

Distributions of amplitude of the site dipoles in the MD model and in the noncorrelated model. The noncorrelated models were calculated by placing a randomly oriented unit vector u on each oxygen atom of moving water molecules along the MD trajectory. The orientations of u were changed by gradual or sudden rotation. In the gradual rotation, the orientation was renewed at each step of trajectory as uu′ = u + Δu, where Δu was a small random vector and u′ was normalized as  u′  = 1. In the sudden rotation, u was randomly rotated at each step of trajectory with a small probability ɛ. The rotational relaxation time of u was set to the value (5.2 ps) in the current simulation in both rotations with modulating Δu or ɛ. (A) Distributions of amplitude of the coarse-grained site dipoles in the MD model, |(ri,R)|, and in the noncorrelated model, |Y(ri,R)|, and distributions of amplitude of the vorticities in the MD model, |v(ri,R)|, and in the noncorrelated model, |vY(ri,R)| (R = 4Lcube). Either gradual or sudden rotation provides exactly the same results. (B) Distributions of amplitude of the coarse-grained, time-averaged site dipoles in the MD model, |w(ri,R)|, and in the noncorrelated model, |Yw(ri,R)|, and distributions of amplitude of the time-averaged vorticities in the MD model, |vw(ri,R)|, and in the noncorrelated model, |vYw(ri,R)|. Here, Y = “g” for the gradual rotation of the noncorrelated model and Y = “s” for the sudden rotation. w = 300 ps and R = 4Lcube.