Table 2. Association to the chromosome 5p13 region in Swedish multiplex/simplex families.
Marker name | Location bp | Minor Allele | Minor allele frequency | Call rate % | p-value |
rs1158292 | 63 001 317 | A | 0.38 | 93 | 0.2 |
rs1364043 | 63 266 735 | G | 0.22 | 89 | 0.03 |
rs970453 | 63 266 983 | C | 0.46 | 87 | 0.008 |
rs72767932 | 63 267 175 | G | 0.14 | 88 | 0.003 |
rs1423691 | 63 267 546 | C | 0.48 | 84 | 0.002 |
rs749099 | 63 269 720 | T | 0.45 | 94 | 0.02 |
rs749098 | 63 270 176 | G | 0.20 | 85 | 0.1 |
rs878567 | 63 271 875 | C | 0.50 | 91 | 0.06 |
rs6449693 | 63 271 902 | A | 0.50 | 95 | 0.1 |
rs6295 | 63 274 449 | G | 0.49 | 90 | 0.01 |
rs1364041 | 63 324 375 | G | 0.12 | 97 | 0.2 |
rs382098 | 63 310 581 | C | 0.48 | 89 | 0.08 |
rs749100 | 63 323 746 | C | 0.41 | 95 | 0.007 |
rs356562 | 63 346 993 | A | 0.4 | 95 | 0.001 |
rs356570 | 63 463 673 | G | 0.37 | 89 | 0.002 |
rs12697015 | 63 4886 95 | C | 0.15 | 98 | 0.3 |
rs6880454 | 63 502 802 | T | 0.08 | 95 | 0.01 |
rs11949052 | 63 532 300 | A | 0.14 | 98 | 0.4 |
SNP location (bp) was obtained from “HapMap Data Rel 19/phasell Oct 05, on NCBI B34 assembly, dbSNP b124” in HapMap.
Minor allele frequencies and p-values for the Swedish multiple/simplex families were obtained from Unphased v. 3.0.6. Hardy-Weinberg (H–W) values were calculated amongst controls.