Table 1.
Name | Primer sequence | Annealing | Extension | Cycles | |
---|---|---|---|---|---|
asl/outer | fw | GSKAARTTTAATGGKGCTGTWGG | 47°C, 30 s | 72°C, 50 s | 35 |
rv | GGATTAAYTTTATGAGGCATTG | ||||
asl/nested | fw | GCTGATMAAAATRTTGATTGG | 50°C, 30 s | 72°C, 30 s | 38 |
rv | GAGGCATTGTACTACTWCC | ||||
clpc/outer | fw | AAACTGAATTAGCAAAAATATTA | 50°C, 30 s | 72°C, 50 s | 38 |
rv | CGWGCWCCATATAAAGGAT | ||||
clpc/nested | fw | GATTTGATATGAGTGAATATATGG | 48°C, 30 s | 72°C, 30 s | 40 |
rv | CCATATAAAGGATTATAWG | ||||
coI/outer | fw | CTATTTATGGTTTTCATTTTTATTTGGTA | 57°C, 30 s | 72°C, 50 s | 35 |
rv | AGGAATACGTCTAGGCATTACATTAAATCC | ||||
coI/nested Po | fw | AGCAATATCAATAGCTGCATTACCT | 62°C, 30 s | 72°C, 50 s | 38 |
rv | GATTTTCTTCAATATAATGCCTGGA | ||||
cytb/outer | fw | TAATGCCTAGACGTATTCCTGATTATCCAG | 55°C, 30 s | 72°C, 50 s | 35 |
rv | TGTTTGCTTGGGAGCTGTAATCATAATGTG | ||||
cytb/nested | fw | TCAACAATGACTTTATTTGG | 55°C, 30 s | 72°C, 50 s | 40 |
rv | TGCTGTATCATACCCTAAAG |
All denaturation and final extension periods are the same for all primer-pairs.