Table 2. CpG methylation in the INS promoter in T1D patients and controls.
T1D Patients (N = 485) | CONTROLS (N = 317) | T1D Patients (n = 485) | CONTROLS (n = 317) | |||
DNA methylation (%) | p | Hypomethylated subjects N (%) | p | |||
CpG -19 | 54±10 | 64±6 | <2.10-16 | 190 (39%) | 12 (4%) | <2.10−16 |
CpG -69 | 90±4 | 89±6 | 0.65 | |||
CpG -102 | 73±6 | 73±9 | 0.11 | |||
CpG -135 | 52±9 | 68±5 | <2.10−16 | 273 (56%) | 12 (4%) | <2.10−16 |
CpG -180 | 69±7 | 66±11 | 1.10−6 | |||
CpG -206 | 91±5 | 91±7 | 0.62 | |||
CpG -234 | 54±9 | 62±6 | <2.10−16 | 178 (37%) | 8 (2%) | <2.10−16 |
CpGs -19, -135, -180 | 53±9 | 64±6 | <2.10−16 | 70 (14%) | 0 | <2.10−16 |
Results are expressed as mean ± sd. P-values are calculated by Wilcoxon rank sum test. Hypomethylated subject of a given CpG is defined by a methylation value below -2SD of the corresponding control level. We have only shown, for clarity, the hypomethylated subjects in the right part of the table. In contrast, note that methylation of CpG -180 is increased in T1D patients.