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. 2012 May 7;18(17):2043–2052. doi: 10.3748/wjg.v18.i17.2043

Table 1.

Primer sequences for polymerase chain reaction

Gene Primer sequences (forward/reverse 5’-3’) Accession No. Location to transcription start Product size (bp) Annealing temperature (°C)
SPARC methylation GAGAGCGCGTTTTGTTTGTC NM_003118.2 +52 to +71 112 54
AACGACGTAAACGAAAATATCG +142 to +163
SPARC unmethylation TTTTTTAGATTGTTTGGAGAGTG NM_003118.2 +36 to +58 132 59
AACTAACAACATAAACAAAAATATC +143 to +167
SPARC BS GATAGAGATAGTTTTGGTTATGGGA NM_003118.2 -119 to -95 401 55
CCACCTTCTAAAAAACA ACAAAC +260 to +282
SPARC mRNA CGCATGCGGGACTGGCTCAA NM_003118.2 +601 to +620 148 60
GCTCCACGGGG TGGTC TCCT +729 to +748
GAPDH mRNA GGGCATCCTGGGCTACACTGA NM_002046.3 +915 to +935 143 58
CAAATTCGTTGTCATACCAGGAAATG +1032 to +1057

SPARC: Secreted protein acidic and rich in cysteine; BS: Bisulfite sequencing; GAPDH: Glyceraldehyde 3-phosphate dehydrogenase.