Table 1.
Gene | Primer sequences (forward/reverse 5’-3’) | Accession No. | Location to transcription start | Product size (bp) | Annealing temperature (°C) |
SPARC methylation | GAGAGCGCGTTTTGTTTGTC | NM_003118.2 | +52 to +71 | 112 | 54 |
AACGACGTAAACGAAAATATCG | +142 to +163 | ||||
SPARC unmethylation | TTTTTTAGATTGTTTGGAGAGTG | NM_003118.2 | +36 to +58 | 132 | 59 |
AACTAACAACATAAACAAAAATATC | +143 to +167 | ||||
SPARC BS | GATAGAGATAGTTTTGGTTATGGGA | NM_003118.2 | -119 to -95 | 401 | 55 |
CCACCTTCTAAAAAACA ACAAAC | +260 to +282 | ||||
SPARC mRNA | CGCATGCGGGACTGGCTCAA | NM_003118.2 | +601 to +620 | 148 | 60 |
GCTCCACGGGG TGGTC TCCT | +729 to +748 | ||||
GAPDH mRNA | GGGCATCCTGGGCTACACTGA | NM_002046.3 | +915 to +935 | 143 | 58 |
CAAATTCGTTGTCATACCAGGAAATG | +1032 to +1057 |
SPARC: Secreted protein acidic and rich in cysteine; BS: Bisulfite sequencing; GAPDH: Glyceraldehyde 3-phosphate dehydrogenase.