Table 3.
A comparison of the expected and observed percentage of zeros in several regression models of the ENCODE dataset.
| Observed vs. expected percentage of zero counts | |||||
|---|---|---|---|---|---|
| Cell line | Observed | P | NB | ZIP | ZINB |
| Gm10847InputIggrab | 22.07% | 9.85% | 20.89% | 23.513% | 23.239% |
| Gm10847MusiggMusigg | 22.013% | 9.94% | 20.868% | 23.361% | 23.22% |
| Gm12878InputIggrab | 14.21% | 1.08% | 9.841% | 15.709% | 15.659% |
| Gm12878MusiggMusigg | 26.532% | 15.703% | 25.846% | 27.858% | 27.64% |
| Gm12891InputIggrab | 28.477% | 9.49% | 28.89% | 29.57% | 30.463% |
| Gm12891MusiggMusigg | 23.583% | 11.168% | 22.71% | 25.336% | 25.536% |
| Gm12892InputIggrab | 27.801% | 13.15% | 27.818% | 29.03% | 28.909% |
| Gm12892MusiggMusigg | 30.705% | 13.986% | 31.292% | 31.8% | 29.211% |
| Gm15510InputIggrab | 22.977% | 10.883% | 21.917% | 24.467% | 24.256% |
| Gm15510MusiggMusigg | 20.134% | 4.635% | 19.06% | 21.562% | 21.43% |
| Gm18505InputIggrab | 21.63% | 9.213% | 20.438% | 22.899% | 22.775% |
| Gm18505MusiggMusigg | 27.304% | 15.044% | 27.647% | 28.588% | 28.727% |
| Gm18526InputIggrab | 22.975% | 11.938% | 21.904% | 24.475% | 24.282% |
| Gm18526MusiggMusigg | 25.478% | 11.245% | 25.425% | 26.829% | 26.825% |
| Gm18951InputIggrab | 24.975% | 12.554% | 24.188% | 26.483% | 26.113% |
| Gm19099InputIggrab | 20.983% | 9.691% | 19.188% | 22.744% | 22.456% |
| Gm19099MusiggMusigg | 19.31% | 4.581% | 17.648% | 20.762% | 20.718% |
| Gm19193InputIggrab | 24.35% | 11.492 | 23.484% | 25.86% | 25.521% |
| Gm19193MusiggMusigg | 21.558% | 8.187% | 20.037% | 23.115% | 22.884% |
| Helas3LargeFragment | 19.1% | 4.153% | 16.580% | 21.492% | 21.274% |
| Helas3MnaseV2 | 18.885% | 3.37% | 18.504% | 21.282% | 21.854% |
| Helas3MouseiggV2 | 14.241% | .956% | 10.421% | 16.322% | 16.158% |
| Helas3Nakeddna | 15.007% | 1.895% | 11.678% | 17.094% | 17.125% |
| Hepg2ControlForskln | 32.54% | 15.266% | 32.787% | 33.927% | 34.918% |
| Hepg2ControlInskln | 45.481% | 22.747% | 46.602% | 46.522% | 48.245% |
| Hepg2InputV2 | 48.906% | 36.024% | 48.949% | 50.9% | 50.611% |
| HuvecInputStd | 10.696% | .091% | 5.938% | 12.227% | 12.283% |
| K562InputV3 | 13.664% | .429% | 11.19% | 14.233% | 14.686% |
| K562MusiggMusigg | 13.815% | .456% | 10.269% | 15.126% | 15.114% |
| Mcf7Input | 15.713% | 1.253% | 14.447% | 16.193% | 16.542% |
| Nt2d1InputV2 | 14.945% | 2.775% | 11.624% | 17.56% | 17.546% |