Table 1. Primers for conventional fliC PCR and primers and TaqMan probe for identification and diagnosis of ‘D. solani’.
primer or probe | sequence (5′ 3′) | reference | derived from | amplicon | use |
fliC-1 | TATCAACAGCGCCAAAGACAACGC | 37 | D. dadantii CFBP 3855 | ∼650 bp | PCR & sequencing |
fliC-2 | ACGGCTCATGTTGGATACTTCGTT | ||||
fliC-for | GACCGTACTGCAATCCAGC | 38 | D. dadantii CFBP 3855 | ∼370 bp | PCR & sequencing |
fliC-rev | CTGGAAGCGGTTCAGAGT | ||||
ds-f | GCGAACTTCAACGGTAAA | this study | ‘D. solani’ GBBC 2040 | 112 bp | TaqMan® real-time PCR |
ds-r | CAGAGCTACCAACAGAGA | ||||
ds-p* | CTCTGCTGGACGGTTC |
probe.