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. 2012 Apr 26;8(4):e1002484. doi: 10.1371/journal.pcbi.1002484

Table 1. Numerical results for pBR322 calculated at Inline graphic and T = 308 K using the SIDD, SIBZ, and BDZtrans algorithms.

Algorithm time (min) number of states Inline graphic Inline graphic Inline graphic Inline graphic
SIDD 0.067 2187531 1.0 - 53.5 -
SIBZ 0.85 452111726 - 2.7 - 27.5
BDZtrans 0.43 160664229 0.80 1.00 39.4 10.0

In all cases a threshold of Inline graphic12 kcal/mol was used. Values are shown for the total execution time, the total number of included states, the average number of runs Inline graphic, and the average number of transformed base pairs Inline graphic.