Abstract
In the title compound, C16H9Cl2N5O2, the folded molecular conformation is characterized by a dihedral angle between the two benzene rings of 74.03 (5)°. An intramolecular N—H⋯O hydrogen bond is observed between the H atom of the amide group and a nitro-group O atom. Intermolecular C—H⋯O and N—H⋯N hydrogen bonds feature in the crystal packing.
Related literature
For general background to N-1-diaryl-1H-pyrazol-5-amine derivatives as synthetic intermediates in the preparation of medicinal compounds and the synthesis of the title compound, see: Markwalder et al. (2004 ▶); Mehdi et al. (2010 ▶). For the pharmacological activity of the 5-aminopyrazole nucleus, see: Nils et al. (2010 ▶); Aymn et al. (2005 ▶).
Experimental
Crystal data
C16H9Cl2N5O2
M r = 374.18
Orthorhombic,
a = 13.878 (3) Å
b = 13.475 (3) Å
c = 17.421 (4) Å
V = 3257.7 (11) Å3
Z = 8
Mo Kα radiation
μ = 0.42 mm−1
T = 293 K
0.20 × 0.18 × 0.12 mm
Data collection
Rigaku Saturn724 CCD diffractometer
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) ▶ T min = 0.921, T max = 0.951
31011 measured reflections
3888 independent reflections
2738 reflections with I > 2σ(I)
R int = 0.050
Refinement
R[F 2 > 2σ(F 2)] = 0.052
wR(F 2) = 0.142
S = 1.04
3888 reflections
231 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.24 e Å−3
Δρmin = −0.24 e Å−3
Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2005) ▶; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812011506/kp2396sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011506/kp2396Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812011506/kp2396Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C9—H9⋯O2i | 0.93 | 2.51 | 3.050 (3) | 117 |
| C5—H5⋯O1ii | 0.93 | 2.58 | 3.374 (3) | 143 |
| N4—H4⋯N3iii | 0.82 (3) | 2.62 (3) | 3.201 (3) | 129 (2) |
| N4—H4⋯O1 | 0.82 (3) | 2.02 (3) | 2.608 (2) | 128 (2) |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
The authors thank the State Key Laboratory of Elemento-organic Chemistry, Nankai University, for the X-ray data collection.
supplementary crystallographic information
Comment
N-1-Diaryl-1H-pyrazol-5-amine derivatives possess therapeutic value. They are synthetic intermediates in the preparation of medicinal compounds (Markwalder et al., 2004; Mehdi et al., 2010). 5-Aminopyrazole nucleus is associated with several pharmacological activities such as selective adenosine A1 receptor antagonists (Nils et al., 2010) and antimicrobial activity (Aymn et al., 2005). In view of this biological importance a part of our ongoing studies of pyrazole derivatives includes the crystal structure determination of the title compound. The folded molecular conformation is characterised by the dihedral angle between the two benzene rings of 74.03 (5) ° (Fig. 1). Intramolecular N—H···O hydrogen bond between the hydrogen of the amide group and the nitro group O atom is observed. The crystal packing is stabilised by intermolecular C—H···O and N—H···N hydrogen bonds (Table 1).
Experimental
To a mixture of 5-amino-1-(2,4-dichlorophenyl)-1H-pyrazole-4-carbonitrile (3.0 g, 11.85 mmol) and o-nitrochlorobenzene (3.74 g, 23.74 mmol) in dimethyl sulfoxide (10 mL) lithium hydroxide monohydrate (0.74 g, 17.87 mmol) was added. The solution was heated at 343 K for 4.5 h. After cooling to 293 K, 50 mL of water was added to the reaction mixture. The resulting precipitate was collected by filtration, washed with ethanol to yield the title compound as a brown yellow solid (3.28 g, 73.95%). Crystals suitable for X-ray analysis were obtained from ethanol:acetone (1:1) solution by slow evaporation.
Refinement
All H atoms were geometrically positioned (C—H 0.93–0.98 Å) and treated as riding, with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
The structure of C16H9Cl2N5O2 with all non-H atom-labelling scheme and ellipsoids drawn at the 50% probability level.
Crystal data
| C16H9Cl2N5O2 | F(000) = 1520 |
| Mr = 374.18 | Dx = 1.526 Mg m−3 |
| Orthorhombic, Pbcn | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P2n2ab | Cell parameters from 7017 reflections |
| a = 13.878 (3) Å | θ = 2.4–28.0° |
| b = 13.475 (3) Å | µ = 0.42 mm−1 |
| c = 17.421 (4) Å | T = 293 K |
| V = 3257.7 (11) Å3 | Prism, yellow |
| Z = 8 | 0.20 × 0.18 × 0.12 mm |
Data collection
| Rigaku Saturn724 CCD diffractometer | 3888 independent reflections |
| Radiation source: rotating anode | 2738 reflections with I > 2σ(I) |
| Multilayer monochromator | Rint = 0.050 |
| Detector resolution: 7.31 pixels mm-1 | θmax = 27.9°, θmin = 2.3° |
| ω scans | h = −17→17 |
| Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | k = −17→16 |
| Tmin = 0.921, Tmax = 0.951 | l = −22→22 |
| 31011 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.052 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.142 | w = 1/[σ2(Fo2) + (0.0759P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.04 | (Δ/σ)max = 0.001 |
| 3888 reflections | Δρmax = 0.24 e Å−3 |
| 231 parameters | Δρmin = −0.24 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0166 (13) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.15552 (5) | 0.60779 (4) | 0.46994 (4) | 0.0673 (2) | |
| Cl2 | −0.14562 (5) | 0.48959 (6) | 0.30041 (5) | 0.0881 (3) | |
| O1 | 0.35014 (15) | 0.63038 (12) | 0.30863 (12) | 0.0858 (6) | |
| O2 | 0.41521 (15) | 0.62525 (14) | 0.19700 (10) | 0.0914 (6) | |
| N1 | 0.20172 (14) | 0.33598 (13) | 0.53423 (10) | 0.0540 (5) | |
| N2 | 0.20985 (13) | 0.39203 (11) | 0.46920 (9) | 0.0467 (4) | |
| N3 | 0.54146 (17) | 0.37889 (14) | 0.51865 (12) | 0.0667 (5) | |
| N4 | 0.32727 (13) | 0.46781 (13) | 0.38776 (9) | 0.0477 (4) | |
| N5 | 0.37959 (14) | 0.58365 (14) | 0.25298 (11) | 0.0609 (5) | |
| C1 | 0.09266 (15) | 0.51444 (13) | 0.42412 (12) | 0.0481 (5) | |
| C2 | 0.00946 (15) | 0.53705 (15) | 0.38503 (13) | 0.0558 (6) | |
| H2A | −0.0128 | 0.6021 | 0.3830 | 0.067* | |
| C3 | −0.04013 (16) | 0.46247 (16) | 0.34907 (13) | 0.0556 (6) | |
| C4 | −0.00852 (16) | 0.36558 (16) | 0.35107 (13) | 0.0575 (6) | |
| H4A | −0.0428 | 0.3158 | 0.3261 | 0.069* | |
| C5 | 0.07443 (15) | 0.34366 (14) | 0.39045 (12) | 0.0521 (5) | |
| H5 | 0.0962 | 0.2785 | 0.3925 | 0.063* | |
| C6 | 0.12581 (15) | 0.41746 (14) | 0.42708 (11) | 0.0446 (5) | |
| C7 | 0.30239 (15) | 0.41365 (13) | 0.45245 (11) | 0.0438 (5) | |
| C8 | 0.35782 (15) | 0.37153 (15) | 0.50928 (12) | 0.0476 (5) | |
| C9 | 0.29092 (16) | 0.32434 (15) | 0.55794 (11) | 0.0536 (5) | |
| H9 | 0.3079 | 0.2890 | 0.6018 | 0.064* | |
| C10 | 0.45966 (19) | 0.37500 (15) | 0.51458 (12) | 0.0516 (5) | |
| C11 | 0.34423 (13) | 0.42402 (14) | 0.31790 (11) | 0.0407 (4) | |
| C12 | 0.33508 (16) | 0.32211 (15) | 0.30894 (12) | 0.0559 (6) | |
| H12 | 0.3164 | 0.2838 | 0.3508 | 0.067* | |
| C13 | 0.35285 (19) | 0.27656 (18) | 0.24013 (15) | 0.0735 (7) | |
| H13 | 0.3455 | 0.2082 | 0.2360 | 0.088* | |
| C14 | 0.3815 (2) | 0.3305 (2) | 0.17670 (14) | 0.0750 (7) | |
| H14 | 0.3942 | 0.2988 | 0.1304 | 0.090* | |
| C15 | 0.39084 (16) | 0.4299 (2) | 0.18286 (12) | 0.0608 (6) | |
| H15 | 0.4098 | 0.4670 | 0.1404 | 0.073* | |
| C16 | 0.37242 (14) | 0.47708 (15) | 0.25204 (11) | 0.0453 (5) | |
| H4 | 0.3360 (18) | 0.528 (2) | 0.3926 (15) | 0.077 (8)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0852 (5) | 0.0448 (3) | 0.0719 (4) | −0.0062 (3) | −0.0050 (3) | −0.0152 (3) |
| Cl2 | 0.0593 (4) | 0.1038 (6) | 0.1013 (6) | 0.0108 (3) | −0.0192 (4) | −0.0065 (4) |
| O1 | 0.1372 (18) | 0.0455 (10) | 0.0746 (13) | −0.0036 (9) | 0.0066 (11) | 0.0082 (9) |
| O2 | 0.1296 (16) | 0.0868 (13) | 0.0577 (11) | −0.0414 (11) | −0.0163 (11) | 0.0338 (9) |
| N1 | 0.0691 (13) | 0.0515 (10) | 0.0413 (9) | −0.0029 (8) | 0.0045 (8) | 0.0103 (7) |
| N2 | 0.0577 (11) | 0.0429 (9) | 0.0394 (9) | −0.0014 (7) | 0.0013 (7) | 0.0059 (6) |
| N3 | 0.0697 (15) | 0.0613 (12) | 0.0691 (14) | 0.0055 (10) | −0.0084 (10) | 0.0057 (9) |
| N4 | 0.0668 (11) | 0.0363 (9) | 0.0401 (9) | −0.0063 (8) | 0.0028 (8) | 0.0020 (7) |
| N5 | 0.0745 (13) | 0.0594 (12) | 0.0488 (12) | −0.0166 (10) | −0.0150 (10) | 0.0172 (9) |
| C1 | 0.0547 (13) | 0.0399 (10) | 0.0499 (12) | −0.0017 (9) | 0.0047 (10) | −0.0043 (8) |
| C2 | 0.0593 (14) | 0.0464 (12) | 0.0617 (14) | 0.0075 (10) | 0.0046 (11) | −0.0014 (10) |
| C3 | 0.0485 (13) | 0.0607 (14) | 0.0576 (14) | 0.0001 (10) | 0.0000 (10) | 0.0011 (10) |
| C4 | 0.0570 (14) | 0.0552 (13) | 0.0603 (14) | −0.0137 (11) | 0.0003 (11) | −0.0063 (10) |
| C5 | 0.0603 (13) | 0.0374 (10) | 0.0586 (13) | −0.0049 (9) | 0.0041 (11) | −0.0001 (9) |
| C6 | 0.0504 (12) | 0.0412 (10) | 0.0421 (11) | −0.0031 (8) | 0.0036 (9) | 0.0022 (8) |
| C7 | 0.0556 (13) | 0.0383 (10) | 0.0375 (10) | 0.0000 (8) | 0.0012 (9) | 0.0007 (7) |
| C8 | 0.0616 (14) | 0.0411 (10) | 0.0400 (11) | 0.0023 (9) | −0.0034 (9) | −0.0011 (8) |
| C9 | 0.0733 (16) | 0.0472 (12) | 0.0401 (11) | 0.0021 (10) | −0.0014 (10) | 0.0068 (8) |
| C10 | 0.0625 (16) | 0.0450 (11) | 0.0472 (12) | 0.0066 (10) | −0.0054 (10) | 0.0006 (8) |
| C11 | 0.0394 (10) | 0.0420 (10) | 0.0406 (10) | −0.0025 (8) | −0.0020 (8) | 0.0023 (8) |
| C12 | 0.0729 (14) | 0.0439 (11) | 0.0511 (13) | −0.0054 (10) | 0.0077 (11) | −0.0017 (9) |
| C13 | 0.097 (2) | 0.0552 (15) | 0.0684 (17) | −0.0038 (12) | 0.0093 (14) | −0.0156 (12) |
| C14 | 0.0862 (18) | 0.0849 (19) | 0.0540 (15) | −0.0084 (15) | 0.0118 (13) | −0.0203 (13) |
| C15 | 0.0567 (14) | 0.0836 (17) | 0.0422 (12) | −0.0094 (12) | 0.0042 (10) | 0.0003 (11) |
| C16 | 0.0428 (11) | 0.0514 (11) | 0.0419 (11) | −0.0071 (9) | −0.0053 (8) | 0.0061 (8) |
Geometric parameters (Å, º)
| Cl1—C1 | 1.726 (2) | C4—C5 | 1.372 (3) |
| Cl2—C3 | 1.731 (2) | C4—H4A | 0.9300 |
| O1—N5 | 1.226 (3) | C5—C6 | 1.380 (3) |
| O2—N5 | 1.229 (2) | C5—H5 | 0.9300 |
| N1—C9 | 1.314 (3) | C7—C8 | 1.376 (3) |
| N1—N2 | 1.366 (2) | C8—C9 | 1.409 (3) |
| N2—C7 | 1.349 (3) | C8—C10 | 1.417 (3) |
| N2—C6 | 1.420 (3) | C9—H9 | 0.9300 |
| N3—C10 | 1.139 (3) | C11—C12 | 1.388 (3) |
| N4—C11 | 1.373 (2) | C11—C16 | 1.407 (3) |
| N4—C7 | 1.386 (2) | C12—C13 | 1.369 (3) |
| N4—H4 | 0.82 (3) | C12—H12 | 0.9300 |
| N5—C16 | 1.440 (3) | C13—C14 | 1.381 (3) |
| C1—C2 | 1.375 (3) | C13—H13 | 0.9300 |
| C1—C6 | 1.386 (3) | C14—C15 | 1.350 (3) |
| C2—C3 | 1.370 (3) | C14—H14 | 0.9300 |
| C2—H2A | 0.9300 | C15—C16 | 1.386 (3) |
| C3—C4 | 1.378 (3) | C15—H15 | 0.9300 |
| C9—N1—N2 | 104.40 (16) | N2—C7—C8 | 106.71 (18) |
| C7—N2—N1 | 112.17 (16) | N2—C7—N4 | 121.77 (18) |
| C7—N2—C6 | 128.19 (16) | C8—C7—N4 | 131.51 (19) |
| N1—N2—C6 | 119.60 (17) | C7—C8—C9 | 104.52 (19) |
| C11—N4—C7 | 122.49 (17) | C7—C8—C10 | 126.21 (19) |
| C11—N4—H4 | 119.2 (18) | C9—C8—C10 | 129.26 (19) |
| C7—N4—H4 | 118.1 (18) | N1—C9—C8 | 112.19 (18) |
| O1—N5—O2 | 121.8 (2) | N1—C9—H9 | 123.9 |
| O1—N5—C16 | 119.88 (18) | C8—C9—H9 | 123.9 |
| O2—N5—C16 | 118.3 (2) | N3—C10—C8 | 179.2 (2) |
| C2—C1—C6 | 120.40 (18) | N4—C11—C12 | 120.61 (17) |
| C2—C1—Cl1 | 119.47 (15) | N4—C11—C16 | 123.50 (17) |
| C6—C1—Cl1 | 120.13 (17) | C12—C11—C16 | 115.88 (18) |
| C3—C2—C1 | 119.08 (19) | C13—C12—C11 | 121.7 (2) |
| C3—C2—H2A | 120.5 | C13—C12—H12 | 119.1 |
| C1—C2—H2A | 120.5 | C11—C12—H12 | 119.1 |
| C2—C3—C4 | 121.6 (2) | C12—C13—C14 | 121.1 (2) |
| C2—C3—Cl2 | 119.61 (17) | C12—C13—H13 | 119.5 |
| C4—C3—Cl2 | 118.80 (17) | C14—C13—H13 | 119.5 |
| C5—C4—C3 | 118.9 (2) | C15—C14—C13 | 119.1 (2) |
| C5—C4—H4A | 120.5 | C15—C14—H14 | 120.4 |
| C3—C4—H4A | 120.5 | C13—C14—H14 | 120.4 |
| C4—C5—C6 | 120.63 (19) | C14—C15—C16 | 120.4 (2) |
| C4—C5—H5 | 119.7 | C14—C15—H15 | 119.8 |
| C6—C5—H5 | 119.7 | C16—C15—H15 | 119.8 |
| C5—C6—C1 | 119.4 (2) | C15—C16—C11 | 121.82 (19) |
| C5—C6—N2 | 119.31 (17) | C15—C16—N5 | 117.01 (19) |
| C1—C6—N2 | 121.28 (17) | C11—C16—N5 | 121.12 (18) |
| C9—N1—N2—C7 | 0.7 (2) | N4—C7—C8—C9 | −178.5 (2) |
| C9—N1—N2—C6 | 178.77 (16) | N2—C7—C8—C10 | 179.56 (19) |
| C6—C1—C2—C3 | 0.0 (3) | N4—C7—C8—C10 | 0.3 (4) |
| Cl1—C1—C2—C3 | −179.77 (17) | N2—N1—C9—C8 | −0.3 (2) |
| C1—C2—C3—C4 | −0.1 (3) | C7—C8—C9—N1 | −0.3 (2) |
| C1—C2—C3—Cl2 | 179.38 (17) | C10—C8—C9—N1 | −179.1 (2) |
| C2—C3—C4—C5 | 0.3 (3) | C7—C8—C10—N3 | 45 (19) |
| Cl2—C3—C4—C5 | −179.17 (17) | C9—C8—C10—N3 | −136 (19) |
| C3—C4—C5—C6 | −0.4 (3) | C7—N4—C11—C12 | 1.3 (3) |
| C4—C5—C6—C1 | 0.3 (3) | C7—N4—C11—C16 | −177.99 (18) |
| C4—C5—C6—N2 | 178.21 (19) | N4—C11—C12—C13 | −179.1 (2) |
| C2—C1—C6—C5 | −0.1 (3) | C16—C11—C12—C13 | 0.2 (3) |
| Cl1—C1—C6—C5 | 179.68 (16) | C11—C12—C13—C14 | 0.5 (4) |
| C2—C1—C6—N2 | −177.94 (18) | C12—C13—C14—C15 | −0.8 (4) |
| Cl1—C1—C6—N2 | 1.8 (3) | C13—C14—C15—C16 | 0.3 (4) |
| C7—N2—C6—C5 | 110.9 (2) | C14—C15—C16—C11 | 0.4 (3) |
| N1—N2—C6—C5 | −66.7 (2) | C14—C15—C16—N5 | −177.1 (2) |
| C7—N2—C6—C1 | −71.2 (3) | N4—C11—C16—C15 | 178.6 (2) |
| N1—N2—C6—C1 | 111.1 (2) | C12—C11—C16—C15 | −0.7 (3) |
| N1—N2—C7—C8 | −0.9 (2) | N4—C11—C16—N5 | −3.9 (3) |
| C6—N2—C7—C8 | −178.74 (17) | C12—C11—C16—N5 | 176.78 (18) |
| N1—N2—C7—N4 | 178.39 (17) | O1—N5—C16—C15 | 168.9 (2) |
| C6—N2—C7—N4 | 0.6 (3) | O2—N5—C16—C15 | −10.8 (3) |
| C11—N4—C7—N2 | −88.3 (2) | O1—N5—C16—C11 | −8.7 (3) |
| C11—N4—C7—C8 | 90.8 (3) | O2—N5—C16—C11 | 171.6 (2) |
| N2—C7—C8—C9 | 0.7 (2) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C9—H9···O2i | 0.93 | 2.51 | 3.050 (3) | 117 |
| C5—H5···O1ii | 0.93 | 2.58 | 3.374 (3) | 143 |
| N4—H4···N3iii | 0.82 (3) | 2.62 (3) | 3.201 (3) | 129 (2) |
| N4—H4···O1 | 0.82 (3) | 2.02 (3) | 2.608 (2) | 128 (2) |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) −x+1/2, y−1/2, z; (iii) −x+1, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: KP2396).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812011506/kp2396sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011506/kp2396Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812011506/kp2396Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

