Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Mar 24;68(Pt 4):o1142. doi: 10.1107/S1600536812011506

1-(2,4-Dichloro­phen­yl)-5-(2-nitro­anilino)-1H-pyrazole-4-carbonitrile

Ju Liu a, Zhi-Qiang Cai b,*, Yang Wang a, Chun-Yan Li c, Li-Feng Xu a
PMCID: PMC3344087  PMID: 22606090

Abstract

In the title compound, C16H9Cl2N5O2, the folded mol­ecular conformation is characterized by a dihedral angle between the two benzene rings of 74.03 (5)°. An intra­molecular N—H⋯O hydrogen bond is observed between the H atom of the amide group and a nitro-group O atom. Inter­molecular C—H⋯O and N—H⋯N hydrogen bonds feature in the crystal packing.

Related literature  

For general background to N-1-diaryl-1H-pyrazol-5-amine derivatives as synthetic inter­mediates in the preparation of medicinal compounds and the synthesis of the title compound, see: Markwalder et al. (2004); Mehdi et al. (2010). For the pharmacological activity of the 5-amino­pyrazole nucleus, see: Nils et al. (2010); Aymn et al. (2005).graphic file with name e-68-o1142-scheme1.jpg

Experimental  

Crystal data  

  • C16H9Cl2N5O2

  • M r = 374.18

  • Orthorhombic, Inline graphic

  • a = 13.878 (3) Å

  • b = 13.475 (3) Å

  • c = 17.421 (4) Å

  • V = 3257.7 (11) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.42 mm−1

  • T = 293 K

  • 0.20 × 0.18 × 0.12 mm

Data collection  

  • Rigaku Saturn724 CCD diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) T min = 0.921, T max = 0.951

  • 31011 measured reflections

  • 3888 independent reflections

  • 2738 reflections with I > 2σ(I)

  • R int = 0.050

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.052

  • wR(F 2) = 0.142

  • S = 1.04

  • 3888 reflections

  • 231 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812011506/kp2396sup1.cif

e-68-o1142-sup1.cif (19.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011506/kp2396Isup2.hkl

e-68-o1142-Isup2.hkl (190.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812011506/kp2396Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C9—H9⋯O2i 0.93 2.51 3.050 (3) 117
C5—H5⋯O1ii 0.93 2.58 3.374 (3) 143
N4—H4⋯N3iii 0.82 (3) 2.62 (3) 3.201 (3) 129 (2)
N4—H4⋯O1 0.82 (3) 2.02 (3) 2.608 (2) 128 (2)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors thank the State Key Laboratory of Elemento-organic Chemistry, Nankai University, for the X-ray data collection.

supplementary crystallographic information

Comment

N-1-Diaryl-1H-pyrazol-5-amine derivatives possess therapeutic value. They are synthetic intermediates in the preparation of medicinal compounds (Markwalder et al., 2004; Mehdi et al., 2010). 5-Aminopyrazole nucleus is associated with several pharmacological activities such as selective adenosine A1 receptor antagonists (Nils et al., 2010) and antimicrobial activity (Aymn et al., 2005). In view of this biological importance a part of our ongoing studies of pyrazole derivatives includes the crystal structure determination of the title compound. The folded molecular conformation is characterised by the dihedral angle between the two benzene rings of 74.03 (5) ° (Fig. 1). Intramolecular N—H···O hydrogen bond between the hydrogen of the amide group and the nitro group O atom is observed. The crystal packing is stabilised by intermolecular C—H···O and N—H···N hydrogen bonds (Table 1).

Experimental

To a mixture of 5-amino-1-(2,4-dichlorophenyl)-1H-pyrazole-4-carbonitrile (3.0 g, 11.85 mmol) and o-nitrochlorobenzene (3.74 g, 23.74 mmol) in dimethyl sulfoxide (10 mL) lithium hydroxide monohydrate (0.74 g, 17.87 mmol) was added. The solution was heated at 343 K for 4.5 h. After cooling to 293 K, 50 mL of water was added to the reaction mixture. The resulting precipitate was collected by filtration, washed with ethanol to yield the title compound as a brown yellow solid (3.28 g, 73.95%). Crystals suitable for X-ray analysis were obtained from ethanol:acetone (1:1) solution by slow evaporation.

Refinement

All H atoms were geometrically positioned (C—H 0.93–0.98 Å) and treated as riding, with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The structure of C16H9Cl2N5O2 with all non-H atom-labelling scheme and ellipsoids drawn at the 50% probability level.

Crystal data

C16H9Cl2N5O2 F(000) = 1520
Mr = 374.18 Dx = 1.526 Mg m3
Orthorhombic, Pbcn Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P2n2ab Cell parameters from 7017 reflections
a = 13.878 (3) Å θ = 2.4–28.0°
b = 13.475 (3) Å µ = 0.42 mm1
c = 17.421 (4) Å T = 293 K
V = 3257.7 (11) Å3 Prism, yellow
Z = 8 0.20 × 0.18 × 0.12 mm

Data collection

Rigaku Saturn724 CCD diffractometer 3888 independent reflections
Radiation source: rotating anode 2738 reflections with I > 2σ(I)
Multilayer monochromator Rint = 0.050
Detector resolution: 7.31 pixels mm-1 θmax = 27.9°, θmin = 2.3°
ω scans h = −17→17
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) k = −17→16
Tmin = 0.921, Tmax = 0.951 l = −22→22
31011 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.142 w = 1/[σ2(Fo2) + (0.0759P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04 (Δ/σ)max = 0.001
3888 reflections Δρmax = 0.24 e Å3
231 parameters Δρmin = −0.24 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0166 (13)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.15552 (5) 0.60779 (4) 0.46994 (4) 0.0673 (2)
Cl2 −0.14562 (5) 0.48959 (6) 0.30041 (5) 0.0881 (3)
O1 0.35014 (15) 0.63038 (12) 0.30863 (12) 0.0858 (6)
O2 0.41521 (15) 0.62525 (14) 0.19700 (10) 0.0914 (6)
N1 0.20172 (14) 0.33598 (13) 0.53423 (10) 0.0540 (5)
N2 0.20985 (13) 0.39203 (11) 0.46920 (9) 0.0467 (4)
N3 0.54146 (17) 0.37889 (14) 0.51865 (12) 0.0667 (5)
N4 0.32727 (13) 0.46781 (13) 0.38776 (9) 0.0477 (4)
N5 0.37959 (14) 0.58365 (14) 0.25298 (11) 0.0609 (5)
C1 0.09266 (15) 0.51444 (13) 0.42412 (12) 0.0481 (5)
C2 0.00946 (15) 0.53705 (15) 0.38503 (13) 0.0558 (6)
H2A −0.0128 0.6021 0.3830 0.067*
C3 −0.04013 (16) 0.46247 (16) 0.34907 (13) 0.0556 (6)
C4 −0.00852 (16) 0.36558 (16) 0.35107 (13) 0.0575 (6)
H4A −0.0428 0.3158 0.3261 0.069*
C5 0.07443 (15) 0.34366 (14) 0.39045 (12) 0.0521 (5)
H5 0.0962 0.2785 0.3925 0.063*
C6 0.12581 (15) 0.41746 (14) 0.42708 (11) 0.0446 (5)
C7 0.30239 (15) 0.41365 (13) 0.45245 (11) 0.0438 (5)
C8 0.35782 (15) 0.37153 (15) 0.50928 (12) 0.0476 (5)
C9 0.29092 (16) 0.32434 (15) 0.55794 (11) 0.0536 (5)
H9 0.3079 0.2890 0.6018 0.064*
C10 0.45966 (19) 0.37500 (15) 0.51458 (12) 0.0516 (5)
C11 0.34423 (13) 0.42402 (14) 0.31790 (11) 0.0407 (4)
C12 0.33508 (16) 0.32211 (15) 0.30894 (12) 0.0559 (6)
H12 0.3164 0.2838 0.3508 0.067*
C13 0.35285 (19) 0.27656 (18) 0.24013 (15) 0.0735 (7)
H13 0.3455 0.2082 0.2360 0.088*
C14 0.3815 (2) 0.3305 (2) 0.17670 (14) 0.0750 (7)
H14 0.3942 0.2988 0.1304 0.090*
C15 0.39084 (16) 0.4299 (2) 0.18286 (12) 0.0608 (6)
H15 0.4098 0.4670 0.1404 0.073*
C16 0.37242 (14) 0.47708 (15) 0.25204 (11) 0.0453 (5)
H4 0.3360 (18) 0.528 (2) 0.3926 (15) 0.077 (8)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0852 (5) 0.0448 (3) 0.0719 (4) −0.0062 (3) −0.0050 (3) −0.0152 (3)
Cl2 0.0593 (4) 0.1038 (6) 0.1013 (6) 0.0108 (3) −0.0192 (4) −0.0065 (4)
O1 0.1372 (18) 0.0455 (10) 0.0746 (13) −0.0036 (9) 0.0066 (11) 0.0082 (9)
O2 0.1296 (16) 0.0868 (13) 0.0577 (11) −0.0414 (11) −0.0163 (11) 0.0338 (9)
N1 0.0691 (13) 0.0515 (10) 0.0413 (9) −0.0029 (8) 0.0045 (8) 0.0103 (7)
N2 0.0577 (11) 0.0429 (9) 0.0394 (9) −0.0014 (7) 0.0013 (7) 0.0059 (6)
N3 0.0697 (15) 0.0613 (12) 0.0691 (14) 0.0055 (10) −0.0084 (10) 0.0057 (9)
N4 0.0668 (11) 0.0363 (9) 0.0401 (9) −0.0063 (8) 0.0028 (8) 0.0020 (7)
N5 0.0745 (13) 0.0594 (12) 0.0488 (12) −0.0166 (10) −0.0150 (10) 0.0172 (9)
C1 0.0547 (13) 0.0399 (10) 0.0499 (12) −0.0017 (9) 0.0047 (10) −0.0043 (8)
C2 0.0593 (14) 0.0464 (12) 0.0617 (14) 0.0075 (10) 0.0046 (11) −0.0014 (10)
C3 0.0485 (13) 0.0607 (14) 0.0576 (14) 0.0001 (10) 0.0000 (10) 0.0011 (10)
C4 0.0570 (14) 0.0552 (13) 0.0603 (14) −0.0137 (11) 0.0003 (11) −0.0063 (10)
C5 0.0603 (13) 0.0374 (10) 0.0586 (13) −0.0049 (9) 0.0041 (11) −0.0001 (9)
C6 0.0504 (12) 0.0412 (10) 0.0421 (11) −0.0031 (8) 0.0036 (9) 0.0022 (8)
C7 0.0556 (13) 0.0383 (10) 0.0375 (10) 0.0000 (8) 0.0012 (9) 0.0007 (7)
C8 0.0616 (14) 0.0411 (10) 0.0400 (11) 0.0023 (9) −0.0034 (9) −0.0011 (8)
C9 0.0733 (16) 0.0472 (12) 0.0401 (11) 0.0021 (10) −0.0014 (10) 0.0068 (8)
C10 0.0625 (16) 0.0450 (11) 0.0472 (12) 0.0066 (10) −0.0054 (10) 0.0006 (8)
C11 0.0394 (10) 0.0420 (10) 0.0406 (10) −0.0025 (8) −0.0020 (8) 0.0023 (8)
C12 0.0729 (14) 0.0439 (11) 0.0511 (13) −0.0054 (10) 0.0077 (11) −0.0017 (9)
C13 0.097 (2) 0.0552 (15) 0.0684 (17) −0.0038 (12) 0.0093 (14) −0.0156 (12)
C14 0.0862 (18) 0.0849 (19) 0.0540 (15) −0.0084 (15) 0.0118 (13) −0.0203 (13)
C15 0.0567 (14) 0.0836 (17) 0.0422 (12) −0.0094 (12) 0.0042 (10) 0.0003 (11)
C16 0.0428 (11) 0.0514 (11) 0.0419 (11) −0.0071 (9) −0.0053 (8) 0.0061 (8)

Geometric parameters (Å, º)

Cl1—C1 1.726 (2) C4—C5 1.372 (3)
Cl2—C3 1.731 (2) C4—H4A 0.9300
O1—N5 1.226 (3) C5—C6 1.380 (3)
O2—N5 1.229 (2) C5—H5 0.9300
N1—C9 1.314 (3) C7—C8 1.376 (3)
N1—N2 1.366 (2) C8—C9 1.409 (3)
N2—C7 1.349 (3) C8—C10 1.417 (3)
N2—C6 1.420 (3) C9—H9 0.9300
N3—C10 1.139 (3) C11—C12 1.388 (3)
N4—C11 1.373 (2) C11—C16 1.407 (3)
N4—C7 1.386 (2) C12—C13 1.369 (3)
N4—H4 0.82 (3) C12—H12 0.9300
N5—C16 1.440 (3) C13—C14 1.381 (3)
C1—C2 1.375 (3) C13—H13 0.9300
C1—C6 1.386 (3) C14—C15 1.350 (3)
C2—C3 1.370 (3) C14—H14 0.9300
C2—H2A 0.9300 C15—C16 1.386 (3)
C3—C4 1.378 (3) C15—H15 0.9300
C9—N1—N2 104.40 (16) N2—C7—C8 106.71 (18)
C7—N2—N1 112.17 (16) N2—C7—N4 121.77 (18)
C7—N2—C6 128.19 (16) C8—C7—N4 131.51 (19)
N1—N2—C6 119.60 (17) C7—C8—C9 104.52 (19)
C11—N4—C7 122.49 (17) C7—C8—C10 126.21 (19)
C11—N4—H4 119.2 (18) C9—C8—C10 129.26 (19)
C7—N4—H4 118.1 (18) N1—C9—C8 112.19 (18)
O1—N5—O2 121.8 (2) N1—C9—H9 123.9
O1—N5—C16 119.88 (18) C8—C9—H9 123.9
O2—N5—C16 118.3 (2) N3—C10—C8 179.2 (2)
C2—C1—C6 120.40 (18) N4—C11—C12 120.61 (17)
C2—C1—Cl1 119.47 (15) N4—C11—C16 123.50 (17)
C6—C1—Cl1 120.13 (17) C12—C11—C16 115.88 (18)
C3—C2—C1 119.08 (19) C13—C12—C11 121.7 (2)
C3—C2—H2A 120.5 C13—C12—H12 119.1
C1—C2—H2A 120.5 C11—C12—H12 119.1
C2—C3—C4 121.6 (2) C12—C13—C14 121.1 (2)
C2—C3—Cl2 119.61 (17) C12—C13—H13 119.5
C4—C3—Cl2 118.80 (17) C14—C13—H13 119.5
C5—C4—C3 118.9 (2) C15—C14—C13 119.1 (2)
C5—C4—H4A 120.5 C15—C14—H14 120.4
C3—C4—H4A 120.5 C13—C14—H14 120.4
C4—C5—C6 120.63 (19) C14—C15—C16 120.4 (2)
C4—C5—H5 119.7 C14—C15—H15 119.8
C6—C5—H5 119.7 C16—C15—H15 119.8
C5—C6—C1 119.4 (2) C15—C16—C11 121.82 (19)
C5—C6—N2 119.31 (17) C15—C16—N5 117.01 (19)
C1—C6—N2 121.28 (17) C11—C16—N5 121.12 (18)
C9—N1—N2—C7 0.7 (2) N4—C7—C8—C9 −178.5 (2)
C9—N1—N2—C6 178.77 (16) N2—C7—C8—C10 179.56 (19)
C6—C1—C2—C3 0.0 (3) N4—C7—C8—C10 0.3 (4)
Cl1—C1—C2—C3 −179.77 (17) N2—N1—C9—C8 −0.3 (2)
C1—C2—C3—C4 −0.1 (3) C7—C8—C9—N1 −0.3 (2)
C1—C2—C3—Cl2 179.38 (17) C10—C8—C9—N1 −179.1 (2)
C2—C3—C4—C5 0.3 (3) C7—C8—C10—N3 45 (19)
Cl2—C3—C4—C5 −179.17 (17) C9—C8—C10—N3 −136 (19)
C3—C4—C5—C6 −0.4 (3) C7—N4—C11—C12 1.3 (3)
C4—C5—C6—C1 0.3 (3) C7—N4—C11—C16 −177.99 (18)
C4—C5—C6—N2 178.21 (19) N4—C11—C12—C13 −179.1 (2)
C2—C1—C6—C5 −0.1 (3) C16—C11—C12—C13 0.2 (3)
Cl1—C1—C6—C5 179.68 (16) C11—C12—C13—C14 0.5 (4)
C2—C1—C6—N2 −177.94 (18) C12—C13—C14—C15 −0.8 (4)
Cl1—C1—C6—N2 1.8 (3) C13—C14—C15—C16 0.3 (4)
C7—N2—C6—C5 110.9 (2) C14—C15—C16—C11 0.4 (3)
N1—N2—C6—C5 −66.7 (2) C14—C15—C16—N5 −177.1 (2)
C7—N2—C6—C1 −71.2 (3) N4—C11—C16—C15 178.6 (2)
N1—N2—C6—C1 111.1 (2) C12—C11—C16—C15 −0.7 (3)
N1—N2—C7—C8 −0.9 (2) N4—C11—C16—N5 −3.9 (3)
C6—N2—C7—C8 −178.74 (17) C12—C11—C16—N5 176.78 (18)
N1—N2—C7—N4 178.39 (17) O1—N5—C16—C15 168.9 (2)
C6—N2—C7—N4 0.6 (3) O2—N5—C16—C15 −10.8 (3)
C11—N4—C7—N2 −88.3 (2) O1—N5—C16—C11 −8.7 (3)
C11—N4—C7—C8 90.8 (3) O2—N5—C16—C11 171.6 (2)
N2—C7—C8—C9 0.7 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C9—H9···O2i 0.93 2.51 3.050 (3) 117
C5—H5···O1ii 0.93 2.58 3.374 (3) 143
N4—H4···N3iii 0.82 (3) 2.62 (3) 3.201 (3) 129 (2)
N4—H4···O1 0.82 (3) 2.02 (3) 2.608 (2) 128 (2)

Symmetry codes: (i) x, −y+1, z+1/2; (ii) −x+1/2, y−1/2, z; (iii) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: KP2396).

References

  1. Aymn, E. R., Ahmed, H. S., Mohamed, I. H. & Hassan, M. A. (2005). Acta Chim. Slov. 52, 429–434.
  2. Markwalder, J. A., Arnone, M. R., Benfield, P. A., Boisclair, M., Burton, C. R., Chang, C. H., Cox, S. S., Czerniak, P. M., Dean, C. L., Doleniak, D., Grafstrom, R., Harrison, B. A., Kaltenbach, R. F., Nugiel, D. A., Rossi, K. A., Sherk, S. R., Sisk, L. M., Stouten, P., Trainor, G. L., Worland, P. & Seitz, S. P. (2004). J. Med. Chem. 47, 5894–5911. [DOI] [PubMed]
  3. Mehdi, B., Ghodsieh, B., Maryam, V., Ali, S., Mehdi, P., Mansour, M., Parvaneh, P. & Maryam, A. (2010). Tetrahedron, 60, 2897–2902.
  4. Nils, G., Lars, B., Heinrich, M., Dirk, S., Nicole, T., Klemens, L., Raimund, K. & Peter, K. (2010). Bioorg. Med. Chem. Lett. 20, 5891–5894.
  5. Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
  6. Rigaku/MSC (2005). Crystal Structure Rigaku/MSC, The Woodlands, Texas, USA.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812011506/kp2396sup1.cif

e-68-o1142-sup1.cif (19.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011506/kp2396Isup2.hkl

e-68-o1142-Isup2.hkl (190.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812011506/kp2396Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES