Table 7. Polymorphism of significantly associated/linked markers to growth traits in three aquaculture broodstocks.

SNP	TL			CS			HF
	A1	A2	MAF	A1	A2	MAF	A1	A2	MAF
nuSNP1	Assay failed
nuSNP7	C	A	0.02	C	A	0.03	C	A	0.03
nuSNP8	Assay failed
nuSNP9*	A	T	0.3	T	A	0.37	T	A	0.23
nuSNP12	C	T	0.08	C	T	0.25	C	T	0.1
nuSNP17	T	C	0.38	T	C	0.1	T	C	0.06
nuSNP20	G	A	0.25	G	A	0.15	G	A	0.31
nuSNP21	G	A	0.25	G	A	0.15	G	A	0.3
nuSNP22*	G	A	0.31	A	G	0.17	A	G	0.19
nuSNP23*	C	T	0.31	T	C	0.18	T	C	0.19
nuSNP24	C	T	0.31	T	C	0.17	T	C	0.19
nuSNP25	A	G	0.13	A	G	0.35	A	G	0.16
nuSNP27	C	G	0.06	C	G	0.33	C	G	0.47
nuSNP29	Monomorphic
mtSNP1*	G	A	0.45	A	G	0.23	G	A	0.31
mtSNP4*	A	G	0.42	A	G	0.23	G	A	0.31
mtSNP6*	T	C	0.44	T	C	0.17	C	T	0.37
mtSNP7*	G	A	0.43	A	G	0.27	A	G	0.25
mtSNP8	C	T	0.14	C	T	0.07	C	T	0.06
mtSNP15*	A	G	0.42	A	G	0.21	G	A	0.31
mtSNP16	A	G	0.45	A	G	0.23	A	G	0.25
mtSNP21	G	A	0.11	0	A	0	G	A	0.15

¹markers were genotyped in 12 broodstocks (8 unrelated fish/stock); TL (Troutlodge, Inc), CS (Clear Springs Foods) and HF (Hagerman Fish Culture Experiment Station), 48 markers were polymorphic, the average MAF is 0.24.

^*indicate different minor alleles between different populations.