Table 1. Relative size of linkage groups (LG) (assuming the genome size of 1300 cM), and the number of single nucleotide polymorphisms (SNPs) retained on each LG after various quality checks.
LG | Relative size (%) | Initial No. of SNPs | No. of SNPs retained | Average distance (megabase) | Maximum distance (megabase) |
1 | 6.62 | 434 | 143 | 0.252 | 2.599 |
2 | 6.31 | 684 | 243 | 0.161 | 3.534 |
3 | 6.58 | 487 | 148 | 0.267 | 3.055 |
4 | 4.84 | 386 | 139 | 0.177 | 1.523 |
5 | 6.79 | 486 | 162 | 0.232 | 4.352 |
6 | 5.61 | 340 | 107 | 0.282 | 5.362 |
7 | 4.37 | 340 | 120 | 0.255 | 1.873 |
8 | 5.43 | 399 | 129 | 0.272 | 3.446 |
9 | 5.41 | 477 | 202 | 0.177 | 2.607 |
10 | 6.99 | 531 | 136 | 0.272 | 3.073 |
11 | 5.74 | 456 | 155 | 0.257 | 3.306 |
12 | 5.48 | 459 | 147 | 0.245 | 1.925 |
13 | 5.72 | 423 | 127 | 0.315 | 2.543 |
14 | 5.69 | 374 | 113 | 0.296 | 3.945 |
15 | 8.60 | 621 | 200 | 0.273 | 6.206 |
16 | 4.31 | 347 | 119 | 0.188 | 3.090 |
17 | 5.56 | 448 | 110 | 0.245 | 1.492 |
The average distance and the maximum distance between adjacent SNP pairs are also shown for each LG.