Table 4. SNPs with the largest effects (in additive genetic standard deviation) on fruit firmness (FF), soluble solids (SSC), russet, weighted cortex intensity (WCI), astringency (AST) and titratable acid (TA).
Trait | SNP (NCBI db) | Linkage group & position (bp) | Effect | Heterozygosity | Gene name & ID |
FF | ss475883584 | LG10 (20,833,228) | 0.06 | 0.50 | Polygalacturonase (PG); MDP0000232611 |
SSC | ss475878574 | LG6 (12,001,079) | 0.02 | 0.42 | Unknown |
Russet | ss475876799 | LG1 (18,714,053) | 0.03 | 0.42 | 40S ribosomal protein; MDP0000284030 |
WCI | ss475879555 | LG9 (32,840,325) | 0.16 | 0.18 | MdMYB10; MDP0000259616 |
AST | ss475881697 | LG16 (1,540,624) | 0.15 | 0.40 | Leucoanthocyanidin Reductase (LAR1); MDP0000376284 |
TA | ss475882883 | LG8 (19,658,610) | 0.09 | 0.43 | RING finger and CHY zinc finger domain-containing protein; MDP0000294924 |