. 2011 Dec 6;5(2):51–61. doi: 10.1007/s12154-011-0070-x

Table 3.

Over-represented motifs in the promoter regions of 48 genes up-regulated by 56MESS treatment

Motifs^a	Proposed transcription factors	Significance index^b
tgcacc	Aft1p, Aft2p	6.55
gcaccc	Aft1p, Aft2p	9.22
aaaatg	Unidentified	0.09

^aMotifs were obtained from analysis of promoter regions of 56MESS up-regulated genes using RSA tools [70]

^bMinus log transform of the E-value, which is the product of multiplying the p-value by the number of distinct motifs. The p-value is a probability of chance occurrence of particular motifs in the promoter regions of a given list of genes. A higher significance index indicates more significant motifs