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. 2012 Mar 19;287(19):15648–15660. doi: 10.1074/jbc.M112.346361

TABLE 1.

Overall parameters of PabNucS, PabPCNA, and the complex PabNucS-PCNA determined by SAXS

Proteins Mr Concentration Rga MassGuinierb Quality of the fit RgPoroda MassPorodb RgP(r)a Dmaxc Estimate MassP(r)ab Rgatomica Dmaxatomicc Best χ2 NSD between 10 models
mg ml1 Å kDa % Å kDa Å Å kDa Å Å
NucS 59.2 4.31 35.0 60.7 86 35.6 59.2 35.6 111 0.908 55.0 34.5 111.8 0.7912 1.510
NucS + DNA 59.2 3.56 35.0 63.2 91 35.7 62.4 35.6 111 0.935 55.5 34.6 112.4 0.9625 1.717
PCNA 86.4 5.3 33.5 84.7 85 33.7 84.1 34.1 99 0.968 82.5 33.6 95.6 0.8060 1.157
NucS + PCNA 145.6 4.6 38.7 148.9 89 38.8 132.8 39.4 130 0.889 137.5 39.9 131.2 1.242 0.833

a Rg, RgPorod, RgP(r), and Rgatomic given by the Guinier approximation, deduced from the Porod calculation, derived from the distance distribution function, and calculated for the final atomic model using the program CRYSOL, respectively.

b MassGuinier, MassPorod, MassP(r), mass of the protein given by the Guinier approximation, deduced from the Porod calculation, derived from the distance distribution function, and calculated for the final atomic model using the program CRYSOL, respectively.

c Dmax and Dmaxatomic correspond to the values deduced, respectively from the distance distribution function and the final model. The programs developed by Svergun and co-workers (65) minimize the normalized discrepancy function χ2.