Table 3.
Genes differentially expressed in the indicated comparisons and belonging to the most specific and relevant biological processes. N1W>FHN indicates genes induced in Navelate fruits stored for 1 week with respect to FH fruits; P3W<FHP indicates genes repressed in Pinalate fruits stored for 3 weeks with respect to FH fruits; and P3W+ABA<FHP indicates genes repressed in ABA-treated Pinalate fruits stored for 3 weeks with respect to FH fruits. Asterisks indicate genes chosen for multiple linear regression and qRT-PCR analysis.
| Citrus unigene (CFGP DB) | Most similar protein | Homologue in A. thaliana |
| N1W>FHN | Response to water deprivation (GO level 5) | |
| aCL474Contig1 | ABF4: putative ripening-related bZIP protein | AT3G19290 |
| aC18012D10Rv_c | ADH: aldehyde dehydrogenase – putative | AT1G44170 |
| aCL8452Contig1 | AVP1: vacuolar H+-pyrophosphatase | AT1G15690 |
| aCL5941Contig1 | HB7: homeobox-leucine zipper protein | AT2G46680 |
| aCL5217Contig1 | HK3: histidine kinase | AT1G27320 |
| * aC31106H02EF_c | HVA22E: abscisic acid-induced-like protein | AT5G50720 |
| aCL9Contig16 | LEA5: late embryogenesis abundant protein | AT4G02380 |
| aCL35Contig5 | NAC4: NAC domain protein | AT4G27410 |
| * aCL1933Contig1 | NCED1: 9-cis-epoxycarotenoid dioxygenase 1 | AT3G14440 |
| aCL3500Contig1 | PIP1B: plasma membrane aquaporin | AT2G45960 |
| aC31502B11EF_c | PIP1E: aquaporin | AT4G00430 |
| aCL143Contig2 | PP2C: protein phosphatase 2C | AT3G11410 |
| * aCL96Contig1 | RD19: cysteine proteinase | AT4G39090 |
| * aCL23Contig3 | RD21: cysteine protease CP1 | AT1G47128 |
| aCL1551Contig1 | ZEP: zeaxanthin epoxidase | AT5G67030 |
| N1W>FHN | Di-, tri-valent inorganic cation transport (GO level 7) | |
| aC18018E02Rv_c | CNGC1: cyclic nucleotide-gated calmodulin-binding ion channel | AT5G53130 |
| aC01009A02SK_c | COPT1: copper transporter 1 | AT5G59030 |
| * aCL7045Contig1 | COPT2: copper transporter protein homologue | AT3G46900 |
| * aCL1547Contig2 | COPT5: T1M15_50 protein | AT5G20650 |
| aC04013B01SK_c | ECA3: calcium-transporting ATPase3-endoplasmic reticulum-type | AT1G10130 |
| aKN0AAQ10YG21RM1_c | FER4: ferritin | AT2G40300 |
| aC34108F04EF_c | IRT1: root iron transporter protein | AT4G19690 |
| * aIC0AAA15AB01RM1_c | NRAMP1: metal transporter Nramp1 | AT1G80830 |
| * aCL3476Contig1 | NRAMP3: metal transporter Nramp3 | AT2G23150 |
| aCL5880Contig1 | SAG14: NtEIG-A1 protein | AT5G20230 |
| P3W<FHP, P3W+ABA<FHP | Carbohydrate biosynthetic process (GO level 7) | |
| aC31305H08EF_c | ADG1: ADP-glucose pyrophosphorylase small subunit | AT5G48300 |
| aCL5827Contig1 | ADG1: glucose-1-phosphate adenylyltransferase | AT5G48300 |
| aCL6121Contig1 | CALS1: putative callose synthase 1 catalytic subunit | AT1G05570 |
| aCL4673Contig1 | CESA1: cellulose synthase | AT4G32410 |
| aC03001C04Rv_c | CESA2: cellulose synthase | AT4G39350 |
| aCL1466Contig1 | CTL1: T20M3.12 protein | AT1G05850 |
| aCL18Contig7 | CYP79A2: cytochrome P450 79A2 | AT5G05260 |
| aCL60Contig1 | F9L11.8: granule-bound starch synthase 1 | AT1G32900 |
| aCL281Contig3 | GAPB: glyceraldehyde-3-phosphate dehydrogenase B | AT1G42970 |
| aCL3226Contig1 | GATL10: glycosyl transferase-like protein | AT3G28340 |
| aCL1394Contig1 | GMD2: GDP-mannose 4 -6 dehydratase 1 | AT3G51160 |
| aCL381Contig1 | GOLS2: galactinol synthase | AT1G56600 |
| * aC31301D12EF_c | IPS2: inositol-3-phosphate synthase | AT2G22240 |
| aC08005B05SK_c | KAM1: xyloglucan galactosyltransferase KATAMARI 1 | AT2G20370 |
| * aC04028A10SK_c | MYC2: MYC transcription factor | AT1G32640 |
| aCL4197Contig1 | QUA2: putative early-responsive to dehydration stress protein | AT1G78240 |
| aCL2181Contig1 | SIP1: raffinose synthase | AT5G40390 |
| P3W+ABA < FHP | Protein ubiquitination (GO level 9) | |
| * aCL8840Contig1 | PUB9: F21O3.7 protein | AT3G07360 |
| aC34202B10EF_c | PUB17: Avr9/Cf-9 rapidly elicited protein 276 | AT1G29340 |
| * aC31304F06EF_c | PUB21: immediate-early fungal elicitor protein CMPG1 | AT5G37490 |
| aC31801H08EF_c | PUB24: F26K24.13 protein | AT3G11840 |
| aCL270Contig1 | PUB29: photoperiod responsive protein | AT3G18710 |
| aC05134D01SK_c | PUB43: armadillo repeat-containing protein | AT1G76390 |