Table 2.
Sequence matches for bands from DGGE gels containing dairy barn archaeal and bacterial DNA
| Type of DNA | Band no. | Frequency (no. of positive samples)a | Most similar sequence | bp | % similarity |
|---|---|---|---|---|---|
| Archaeal | 1 | 5 | Methanobrevibacter sp. JQ267743 | 302 | 97 |
| 2 | 2 | Methanobrevibacter smithii JQ267744 | 313 | 97 | |
| 3 | 9 | Methanobrevibacter sp. JQ267745 | 300 | 95 | |
| 4 | 12 | Methanobrevibacter ruminantium JQ267746 | 305 | 95 | |
| 5 | 13 | Methanobrevibacter ruminantium JQ267747 | 316 | 98 | |
| Bacterial | 1 | 13 | Staphylococcus gallinarum JQ267748 | 570 | 99 |
| 1 | 13 | Crocebacterium ilecola JQ267749 | 549 | 99 | |
| 2 | 12 | Oxalobacter sp. JQ267750 | 507 | 97 | |
| 3 | 13 | Agrobacterium tumefaciens JQ267751 | 543 | 99 | |
| 4 | 12 | Clostridium quinii JQ267752 | 542 | 99 | |
| 4 | 12 | Staphylococcus sp. JQ267753 | 564 | 99 | |
| 5 | 2 | Agrobacterium sp. JQ267754 | 435 | 94 | |
| 6 | 12 | Corynebacterium variabile JQ267755 | 550 | 98 | |
| 7 | 13 | Corynebacterium xerosis JQ267756 | 484 | 98 | |
| 8 | 13 | Corynebacterium xerosis JQ267757 | 482 | 95 |
a
Out of 13 total barns.