Table 2.
Oligonucleotides
Primer | Sequence (5′ → 3′)a | Positionb |
---|---|---|
adeN1 | ggatccGCTGTTAGGTTGGGGTCGTA | −387 to −368 |
adeN2c | ggagatgTTTTTGAACCACCAGCATGA | 172–153 |
adeN3d | tcaaaaaCATCTCCCGATCATTCCTCT | 497–516 |
adeN4 | gggcccCGTGACCAAAAGTACGAATCA | 1091–1071 |
adeN5v | TCGTGAGGTTTATCCGGAAG | −645 to −636 |
adeN6v | TGCATTTCAACCAGAGCAAA | 264–283 |
adeN7v | GAAACCCATCATGTGTGCAG | 1294–1275 |
adeN9 | AACGACGGCTAACACTGCTT | −11 to −30 |
adeNM3 | TGCATGATCCAGTCCTTGAG | 2–21 |
adeNM4 | ACCACCAGCATGATTAACGA | 165–146 |
adeNAYE3 | CATTTCAAAATGCAAAAGAATT | 674–653 |
adeNAYE4 | GCAGTGTTAGCCGTCGTTAT | −28 to −9 |
adeNAYE5 | AAAACATTTCACGGCGATAA | 247–228 |
AdeNAYE7 | TTATCGCCGTGAAATGTTTT | 228–247 |
adeNAYE8 | ATTTTGGACATCCAGAGCAC | 444–425 |
TailAdeN1 | TCATGCTGGTGGTTCAAAAA | −122 to −102 |
TailAdeN2 | ACACGCCGCGGTATAGAAC | 51–70 |
TailAdeN3 | TTTTCCCCAAAACTATGCTCT | 152–171 |
adeJ For | GGTCATTAATATCTTTGGC | 1143–1161 |
adeJ Rev | GGTACGAATACCGCTGTCA | 1364–1346 |
rpoB For | TCCGCACGTAAAGTAGGAAC | 2114–2095 |
rpoB Rev | ATGCCGCCTGAAAAAGTAAC | 1959–1979 |
The restriction sites introduced in the oligonucleotides are underlined.
Coordinates refer to the first base of the gene.
The first 7 nucleotides are complementary to those of adeN3 indicated in italics.
The first 7 nucleotides are complementary to those of adeN2 indicated in italics.