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. 2012 May;56(5):2504–2510. doi: 10.1128/AAC.06422-11

Table 2.

Oligonucleotides

Primer Sequence (5′ → 3′)a Positionb
adeN1 ggatccGCTGTTAGGTTGGGGTCGTA −387 to −368
adeN2c ggagatgTTTTTGAACCACCAGCATGA 172–153
adeN3d tcaaaaaCATCTCCCGATCATTCCTCT 497–516
adeN4 gggcccCGTGACCAAAAGTACGAATCA 1091–1071
adeN5v TCGTGAGGTTTATCCGGAAG −645 to −636
adeN6v TGCATTTCAACCAGAGCAAA 264–283
adeN7v GAAACCCATCATGTGTGCAG 1294–1275
adeN9 AACGACGGCTAACACTGCTT −11 to −30
adeNM3 TGCATGATCCAGTCCTTGAG 2–21
adeNM4 ACCACCAGCATGATTAACGA 165–146
adeNAYE3 CATTTCAAAATGCAAAAGAATT 674–653
adeNAYE4 GCAGTGTTAGCCGTCGTTAT −28 to −9
adeNAYE5 AAAACATTTCACGGCGATAA 247–228
AdeNAYE7 TTATCGCCGTGAAATGTTTT 228–247
adeNAYE8 ATTTTGGACATCCAGAGCAC 444–425
TailAdeN1 TCATGCTGGTGGTTCAAAAA −122 to −102
TailAdeN2 ACACGCCGCGGTATAGAAC 51–70
TailAdeN3 TTTTCCCCAAAACTATGCTCT 152–171
adeJ For GGTCATTAATATCTTTGGC 1143–1161
adeJ Rev GGTACGAATACCGCTGTCA 1364–1346
rpoB For TCCGCACGTAAAGTAGGAAC 2114–2095
rpoB Rev ATGCCGCCTGAAAAAGTAAC 1959–1979
a

The restriction sites introduced in the oligonucleotides are underlined.

b

Coordinates refer to the first base of the gene.

c

The first 7 nucleotides are complementary to those of adeN3 indicated in italics.

d

The first 7 nucleotides are complementary to those of adeN2 indicated in italics.

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