Table 4. Frequencies of estimated haplotypes, odds ratios and p-values from logistic regression with the 20 most common haplotypes.

	Haplotype
No.	HLA-A	HLA-C	HLA-B	HLA-DRB1	Cases	Controls	Frequency Cases (%)	Frequency Controls (%)	Frequency Total (%)	Nominal p-value	FDR corrected p-value	Odds Ratio (95% CI)
1.	1	7	8	3	207	240	7.0	8.6	7.7	0.022	0.033	0.78 (0.63–0.96)
2.	3	7	7	15	226	118	7.6	4.2	6.0	2.97×10−07	2.28×10−06	1.90 (1.49–2.44)
3.	2	7	7	15	179	59	6.0	2.1	4.1	1.18×10−12	2.72×10−11	3.14 (2.31–4.34)
4.	2	3	15	4	53	86	1.8	3.1	2.4	0.0066	0.015	0.60 (0.42–0.87)
5.	3	4	35	1	42	72	1.4	2.6	2.0	0.0030	0.0087	0.54 (0.36–0.81)
6.	2	5	12	4	25	81	0.8	2.9	1.8	1.39×10−07	1.60×10−06	0.28 (0.17–0.45)
7.	9	7	7	15	78	23	2.6	0.8	1.7	1.45×10−06	8.33×10−06	3.30 (2.06–5.47)
8.	2	3	40	6	38	56	1.3	2.0	1.6	0.068	0.097	0.67 (0.43–1.03)
9.	10	12	18	15	44	22	1.5	0.8	1.1	0.011	0.021	2.00 (1.19–3.48)
10.	3	3	15	4	33	15	1.1	0.5	0.8	0.0078	0.016	2.35 (1.27–4.52)
11.	1	6	37	15	37	10	1.2	0.4	0.8	0.00021	0.00095	3.87 (1.97–8.35)
12.	2	5	12	15	24	23	0.8	0.8	0.8	0.80	0.82	0.92 (0.51–1.69)
13.	1	7	7	15	30	15	1.0	0.5	0.8	0.020	0.032	2.15 (1.15–4.19)
14.	11	4	35	1	22	21	0.7	0.8	0.7	0.59	0.68	1.19 (0.63–2.23)
15.	19	16	12	7	21	22	0.7	0.8	0.7	0.82	0.82	0.93 (0.49–1.74)
16.	19	3	40	4	12	31	0.4	1.1	0.7	0.0063	0.015	0.38 (0.18–0.74)
17.	2	7	8	3	16	26	0.5	0.9	0.7	0.076	0.10	0.56 (0.29–1.05)
18.	2	3	40	4	17	24	0.6	0.9	0.7	0.20	0.26	0.65 (0.34–1.25)
19.	2	3	15	6	16	24	0.5	0.9	0.7	0.23	0.28	0.67 (0.34–1.27)
20.	3	7	7	4	16	18	0.5	0.6	0.6	0.66	0.72	0.85 (0.42–1.71)