Table 3.
Transcript | Fold increase or decreasea | Protein encoded by the gene | Total no. | Present in BARD |
---|---|---|---|---|
Transcripts whose levels changed by ≥2-fold in the RNA-seq analysis and by ≥6-fold in the microarray analysis | ||||
SCO3142 | 2.23 | Conserved hypothetical protein | No | |
SCO3152 | 2.73 | Conserved hypothetical protein | Yes | |
SCO3216 | −4.81 | Membrane ATPase | No | |
SCO3217 | −2.18 | CdaR | No | |
SCO3223 | −13.76 | Putative ABC transporter | No | |
SCO3224 | −9.71 | Putative ABC transporter ATP-binding protein | No | |
SCO3236 | −3.02 | Possible antibiotic oxygenase | No | |
SCO3244 | −4.19 | Putative secreted protein | No | |
SCO3984 | 2.23 | Conserved hypothetical protein | Yes | |
SCO4843 | 2.20 | Putative integral membrane protein | No | |
SCO4880 | 3.91 | Possible transferase | Yes | |
SCO4947 | 3.23 | Nitrate reductase α chain, NarG3 | Yes | |
SCO4948 | 3.77 | Nitrate reductase β chain, NarH3 | Yes | |
SCO5107 | 3.16 | Putative succinate dehydrogenase membrane subunit | Yes | |
SCO6276 | −4.89 | Epoxide hydrolase | No | |
SCO6277 | −4.95 | Putative secreted protein | Yes | |
SCO6278 | −4.06 | Integral membrane transport protein | No | |
SCO6280 | −2.00 | Similar to Streptomyces nogalater nogalamycin biosynthesis activator, SnoA | No | |
SCO6282 | −15.73 | Probable 3-oxoacyl-[acyl-carrier protein] reductase | Yes | |
SCO6283 | −2.56 | Conserved hypothetical protein | No | |
SCO6682 | −3.80 | Conserved hypothetical protein | 21 | No |
Transcripts whose levels changed by ≥2-fold in the RNA-Seq analysis and by <6-fold in the microarray analysis | 51 | |||
Transcripts whose levels changed by ≥2-fold in the RNA-Seq analysis but which were not listed in the microarray analysis | 72 | |||
Transcripts whose levels changed by ≥6-fold in the microarray analysis but by <2-fold in the RNA-Seq analysis | 165 |
Fold increase or decrease in the level of a given transcript in JSE1880 as compared with that of M145.