Table 2.
Significantly up-regulated genes during transition to the NC state in the stationary phase
| ORF | Gene | Gene product | Changing of gene expression level | ||||
| 5 days | 21 days | 30 days | 41 days | 62 days | |||
| Rv0186 | bglS | Beta-glucosidase | 1 | 4.20459 | 8.33686 | 6.51867 | 5.24295 |
| Rv0840c | pip | Proline iminipeptidase | 1 | 6.33559 | 11.0004 | 4.58881 | 3.86572 |
| Rv0841c | Transmembrane protein | 1 | 31.11093 | 52.56174 | 13.79488 | 11.85425 | |
| Rv0989c | grcC2 | Polyprenil-diphosphate synthase | 1 | 7.60797 | 6.29748 | 7.58723 | 3.94285 |
| Rv0990c | Hypothetical protein | 1 | 7.12899 | 6.60915 | 6.652 | 3.57343 | |
| Rv0991c | Conserved hypothetical protein | 1 | 3.31598 | 3.87521 | 5.44297 | 3.70462 | |
| Rv1369c | Transposase | 1 | 3.17178 | 3.9213 | 4.22925 | 3.86883 | |
| Rv1394c | cyp132 | Cytochrome P450 132 | 1 | 8.89047 | 7.50161 | 3.72981 | 3.12534 |
| Rv1395 | Transcriptional regulatory protein | 1 | 3.22394 | 11.65875 | 7.03908 | 4.27327 | |
| Rv1397c | Conserved hypothetical protein | 1 | 6.95276 | 11.79184 | 5.97336 | 5.77752 | |
| Rv1460 | Transcriptional regulatory protein | 1 | 3.87617 | 5.50637 | 6.90405 | 3.78332 | |
| Rv1575 | phiRV1 phage protein | 1 | 17.29509 | 37.08693 | 51.7473 | 20.53329 | |
| Rv1576c | phiRV1 phage protein | 1 | 28.17817 | 33.97652 | 10.11378 | 12.88182 | |
| Rv1577c | phiRV1 phage protein | 1 | 26.27261 | 39.87495 | 19.41512 | 11.49041 | |
| Rv1584c | phiRV1 phage protein | 1 | 3.27674 | 5.68552 | 3.3055 | 3.02886 | |
| Rv1831 | Hypothetical protein | 1 | 3.1468 | 5.74692 | 5.14019 | 4.04747 | |
| Rv1991c | Conserved hypothetical protein | 1 | 4.04696 | 4.12618 | 4.06786 | 4.65579 | |
| Rv1992c | ctpG | Metal cation transporter ATPase | 1 | 5.2883 | 7.31348 | 4.7442 | 4.22806 |
| Rv2106 | Transposase | 1 | 3.01418 | 5.61324 | 4.77882 | 5.09925 | |
| Rv2254c | Integral membrane protein | 1 | 7.09534 | 6.53956 | 3.33899 | 4.63885 | |
| Rv2278 | Transposase | 1 | 3.28663 | 6.78129 | 6.28036 | 4.13102 | |
| Rv2354 | Transposase | 1 | 3.1594 | 6.15299 | 5.21098 | 3.13151 | |
| Rv2497c | pdhA | Pyruvate dehydrogenase alpha subunit | 1 | 3.73133 | 4.52197 | 5.04976 | 4.00306 |
| Rv2642 | ArsR family transcriptional regulator | 1 | 3.76985 | 5.16757 | 4.39006 | 3.93426 | |
| Rv2644c | Hypothetical protein | 1 | 3.36059 | 7.58921 | 5.36796 | 3.51825 | |
| Rv2645 | Hypothetical protein | 1 | 3.45006 | 8.21393 | 6.70101 | 3.25709 | |
| Rv2646 | Integrase | 1 | 5.04391 | 12.16535 | 7.82435 | 9.96087 | |
| Rv2647 | Hypothetical protein | 1 | 5.32983 | 13.40623 | 9.43796 | 7.2163 | |
| Rv2649 | Transposase IS6110 | 1 | 3.2505 | 5.3557 | 5.59089 | 3.74714 | |
| Rv2650c | phiRv2 prophage protein | 1 | 21.46669 | 29.74372 | 16.65359 | 20.66349 | |
| Rv2651c | phiRv2 prophage protease | 1 | 20.04086 | 34.29153 | 20.61728 | 13.41666 | |
| Rv2660c | Hypothetical protein | 1 | 13.43717 | 41.25793 | 67.29882 | 19.6699 | |
| Rv2661c | Hypothetical protein | 1 | 9.23174 | 28.30861 | 52.34967 | 11.04351 | |
| Rv2662 | Hypothetical protein | 1 | 20.62942 | 18.83647 | 14.72059 | 12.88898 | |
| Rv2663 | Hypothetical protein | 1 | 7.61461 | 9.43216 | 8.19525 | 7.3034 | |
| Rv2664 | Hypothetical protein | 1 | 6.24636 | 8.49102 | 7.10191 | 5.60291 | |
| Rv2666 | Truncated transposase IS1081 | 1 | 6.91867 | 13.89339 | 7.89331 | 5.86579 | |
| Rv2667 | clpC2 | ATP-dependent protease | 1 | 9.44815 | 17.89662 | 9.64508 | 6.46149 |
| Rv2707 | Conserved transmembrane protein | 1 | 3.35002 | 5.09024 | 14.83903 | 4.53239 | |
| Rv2711 | ideR | Transcriptional regulatory protein | 1 | 3.48877 | 4.30099 | 6.06795 | 3.83858 |
| Rv2713 | sthA | Soluble pyridine nucleotide transhydrogenase | 1 | 4.43327 | 6.35516 | 6.80833 | 3.83838 |
| Rv2780 | ald | Secreted L-alanine dehydrogenase ALD | 1 | 5.2891 | 4.65988 | 4.52694 | 4.92656 |
| Rv2814c | Transposase | 1 | 3.3279 | 5.52338 | 4.86873 | 4.60102 | |
| Rv2815c | Transposase | 1 | 3.13667 | 6.24306 | 5.87423 | 4.84337 | |
| Rv3185 | Transposase | 1 | 3.58899 | 6.43621 | 5.67335 | 5.82686 | |
| Rv3186 | Transposase | 1 | 3.2903 | 6.21375 | 6.14822 | 5.77427 | |
| Rv3290c | lat | L-lysine aminotransferase | 1 | 4.32023 | 5.06387 | 3.54801 | 3.9704 |
| Rv3474 | Transposase IS6110 | 1 | 3.04947 | 6.19754 | 6.19869 | 3.22266 | |
| Rv3475 | Transposase IS6110 | 1 | 3.73966 | 5.79892 | 5.63617 | 6.23465 | |
| Rv3580c | cysS | Cysteinyl-tRNA synthetase | 1 | 3.87797 | 6.67899 | 3.14124 | 3.40852 |
| Rv3582c | ispD | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | 1 | 3.50012 | 4.07861 | 3.78626 | 3.51221 |