Table 4.
Query sequence | Number of samples in the database | Name of the database |
Complete mitochondrial genome |
71,664 2,704 14,486 |
Mitosearch (www.mitosearch.org) contains sequences of the hypervariable region; mtDB, Human Mitochondrial Genome Database (www.genpat.uu.se/mtDB); EUROS, our own database, compiled from our own and other authors' published data for the USSR and Russian populations and for certain European populations (German, English, etc.). |
STR-haplotype of the Y-chromosome |
4,163 1,261 |
U.S.Consolidated Y-STR Database, which has genotypes for 15-17 STR loci (http://www.usystrdatabase.org/); Data for Russians from the Y Chromosome Haplotype Reference Database (YHRD, www.yhrd.org/index.html). |
Autosome STRs | > 50,000 | For this study we combined the nonoverlapping data for European populations from two large databases: ALFRED (http://alfred.med.yale.edu/alfred/) and The Distribution of the Human DNA-PCR Polymorphisms database (http://www.uniduesseldorf.de/WWW/MedFak/Serology/database.html) and also added the recently published data on the Russian population. |
SNP in the IVS3-3 position of the F9 gene |
Population SNP database (NCBI, HapMap Project); ~ 928 X-chromosomes of healthy individuals of European descent whose genotypes were assessed for this SNP using PCR-RFLP (Restriction Fragment Length Polymorphism) especially for this study; Hemobase: Hemophilia B mutation registry, Haemophilia B mutation database. |