Table 333.
NMR structure | micelle | bicelles |
PDB code | 2kpe | 2kpf |
NMR data for structure calculation | ||
Total unambiguous NOE restraints | 484 | 520 |
intra-residue | 234 | 278 |
inter-residue | 216 | 214 |
sequential (|i-j|=1) | 128 | 128 |
medium-range (1<|i-j|<4) | 88 | 86 |
long-range (|i-j|>4) | 0 | 0 |
inter-monomeric | 34 | 28 |
Hydrogen bond restraints (upper/lower) intra-monomeric inter-monomeric | 108/108 0/0 | 108/108 0/0 |
Total torsion angle restraints | 156 | 156 |
backbone φ | 56 | 56 |
backbone ψ | 56 | 56 |
side chain χ1 | 44 | 44 |
Structure calculation statistics | ||
CYANA target function (Å2) | 0.75±0.15 | 1.02±0.16 |
Restraint violations | ||
distance (>0.2 Å) | 0 | 0 |
distance (>0.1 Å) | 6 | 5 |
dihedral (>5o) | 0 | 0 |
Average pairwise RMSD (Å) | ||
ТМ α-helix (72-95)2 | ||
backbone atoms | 0.39±0.17 | 0.42±0.13 |
all heavy atoms | 0.94±0.18 | 1.07±0.15 |
generalized RMSD | ||
backbone atoms | 0.72±0.45 | |
all heavy atoms | 1.25±0.37 | |
backbone atoms of mean structures | 1.03 | |
Ramachandran analysis % residues (70-98)2 | ||
in most favored regions | 92.7 | 90.4 |
in additional allowed regions | 7.7 | 6.4 |
in generously allowed regions | 1.4† | 0.2† |
in disallowed regions | 0.4† | 0.7† |
Helix-helix packing | ||
helix-helix contact surface (Å2) | 370±20 | 380±20 |
angleθ(deg.) between the ТМ helix axes | -40±2 | -40±2 |
distanced(Å) between the ТМ helix axes | 6.7±0.4 | 6.4±0.4 |
Table note:
* Residues from unfolded and flexible regions.