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. 2011 Apr-Jun;3(2):90–98.

Table 333.

Structural statistics for representative ensembles of 20 NMR-derived structures of the GpAtm dimer in the DPC micelles and DMPC/DHPC bicelles

NMR structure micelle bicelles
PDB code 2kpe 2kpf
NMR data for structure calculation
Total unambiguous NOE restraints 484 520
intra-residue 234 278
inter-residue 216 214
sequential (|i-j|=1) 128 128
medium-range (1<|i-j|<4) 88 86
long-range (|i-j|>4) 0 0
inter-monomeric 34 28
Hydrogen bond restraints (upper/lower) intra-monomeric inter-monomeric 108/108 0/0 108/108 0/0
Total torsion angle restraints 156 156
backbone φ 56 56
backbone ψ 56 56
side chain χ1 44 44
Structure calculation statistics
CYANA target function (Å2) 0.75±0.15 1.02±0.16
Restraint violations
distance (>0.2 Å) 0 0
distance (>0.1 Å) 6 5
dihedral (>5o) 0 0
Average pairwise RMSD (Å)
ТМ α-helix (72-95)2
backbone atoms 0.39±0.17 0.42±0.13
all heavy atoms 0.94±0.18 1.07±0.15
generalized RMSD
backbone atoms 0.72±0.45
all heavy atoms 1.25±0.37
backbone atoms of mean structures 1.03
Ramachandran analysis % residues (70-98)2
in most favored regions 92.7 90.4
in additional allowed regions 7.7 6.4
in generously allowed regions 1.4 0.2
in disallowed regions 0.4 0.7
Helix-helix packing
helix-helix contact surface (Å2) 370±20 380±20
angleθ(deg.) between the ТМ helix axes -40±2 -40±2
distanced(Å) between the ТМ helix axes 6.7±0.4 6.4±0.4

Table note:

* Residues from unfolded and flexible regions.