Table 4.
Confidence intervals obtained by the bootstrap percentile method for the MA and S-Full sets and different RNA classes in MA
| RNA class | Class size | Confidence Interval (CL = 0.95) | ||||
|---|---|---|---|---|---|---|
| ubcMEA | ubcMFE | rsMEA | rsMFE | gC-pMFmeas | ||
| 16S Ribosomal RNA | 675 | (0.611, 0.639) | (0.630, 0.660) | (0.548, 0.574) | (0.507, 0.536) | (0.652, 0.679) |
| 23S Ribosomal RNA | 159 | (0.609, 0.677) | (0.607, 0.677) | (0.556, 0.618) | (0.530, 0.593) | (0.633, 0.693) |
| 5S Ribosomal RNA | 128 | (0.754, 0.807) | (0.751, 0.806) | (0.573, 0.657) | (0.586, 0.671) | (0.758, 0.804) |
| Group I intron | 89 | (0.605, 0.680) | (0.594, 0.666) | (0.540, 0.611) | (0.513, 0.587) | (0.634, 0.704) |
| Ribonuclease P RNA | 399 | (0.629, 0.659) | (0.588, 0.618) | (0.602, 0.628) | (0.561, 0.588) | (0.665, 0.690) |
| Signal Recognition RNA | 364 | (0.708, 0.750) | (0.698, 0.742) | (0.583, 0.635) | (0.599, 0.651) | (0.685, 0.728) |
| Transfer RNA | 489 | (0.683, 0.723) | (0.742, 0.785) | (0.707, 0.747) | (0.705, 0.748) | (0.754, 0.791) |
| MA | 2305 | (0.664, 0.680) | (0.673, 0.691) | (0.610, 0.627) | (0.591, 0.609) | (0.700, 0.715) |
| S-Full | 3246 | (0.673, 0.688) | (0.678, 0.694) | (0.615, 0.631) | (0.598, 0.616) | (0.704, 0.718) |
Confidence intervals are obtained by the bootstrap percentile method for the MA and S-Full sets and different RNA classes in MA (except Group II intron) when ubcMEA and ubcMFE use the BL* parameter set and rsMEA and rsMFE use the Turner99 parameter set and the confidence level (CL) is set to 0.95.