Table 3.

Summary of mutations generated by Galaxy's Filter pileup

1Chr.	Position	2Ref. base	3Con. base	4Con. Qual.	SNP Qual.	Max. Mapping Qual.	Coverage	5QA coverage	Total number of deviants	6% deviant reads
II	14,208,479	G	A	225	225	60	3,801	3,407	3,379	99.2
II	14,427,587	G	A	225	225	60	7,847	4,268	4,211	98.7
III	2,849,685	A	C	225	225	60	341	319	316	99.1
III	2,954,586	G	A	225	225	60	7,820	2,236	2,208	98.7
III	3,007,742	C	G	225	225	60	1,438	1,177	1,175	99.8
III	3,113,098	G	A	225	225	60	4,170	3,790	3,776	99.6
III	3,114,003	G	T	225	225	60	937	568	567	99.8
III	3,147,629	G	A	225	225	60	2,539	1,558	1,537	98.7
V	4,851,838	C	T	225	225	60	750	669	668	99.9
V	4,979,060	C	T	202	202	60	172	66	65	98.5
V	4,984,678	C	T	152	152	60	134	18	16	88.9
V	5,016,518	C	T	225	225	60	563	509	504	99
V	5,020,510	C	T	225	225	60	2,961	1,333	1,319	98.9
V	5,355,232	C	T	225	225	60	7,841	6,875	6,821	99.2

1. Chromosome

2. Reference base

3. Consensus base

4. Consensus Quality

5. Quality adjusted coverage

6. The percentage of total number of deviants/quality adjusted coverage