Table 1. Minor allele frequencies for each deer lineage.

Frequency	All Deer		Mule Deer		Black-Tailed Deer		White-Tailed Deer
	# loci	%	# loci	%	# loci	%	# loci	%
0*	NA	NA	639	60%	634	59%	599	56%
0.0−0.1	691	64.70%	232	21.72%	200	18.73%	0	0.00%
0.1−0.2	229	21.44%	69	6.46%	71	6.65%	195	18.26%
0.2−0.3	61	5.71%	44	4.12%	73	6.84%	92	8.61%
0.3−0.4	32	3.00%	27	2.53%	35	3.28%	99	9.27%
0.4−0.5	55	5.15%	57	5.34%	55	5.15%	83	7.77%
Total # of polymorphic loci:	1068		429		434		469

^*A MAF value of 0 indicates that loci were polymorphic overall but monomorphic within a particular lineage.