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. Author manuscript; available in PMC: 2013 May 1.
Published in final edited form as: J Pain. 2012 Apr 18;13(5):425–437. doi: 10.1016/j.jpain.2011.02.358

Table 1.

Genes and Single Nucleotide Polymorphisms Analyzed for Pain versus No Pain in Women Prior to Breast Cancer Surgery

Gene SNP Position Chr MAF Alleles Chi Square p-value Model
IFNG1 rs2069728 66834051 12 .079 G>A 2.12 .347 A
IFNG1 rs2069727 66834490 12 .411 A>G 1.72 .422 A
IFNG1 rs2069718 66836429 12 .442 C>T 2.83 .242 A
IFNG1 rs1861493 66837463 12 .264 A>G 2.39 .303 A
IFNG1 rs1861494 66837676 12 .279 T>C 2.50 .287 A
IFNG1 rs2069709 66839970 12 .008 G>T 0.39 .534 A
IFNGR1 rs9376268 137574444 6 .246 G>A 4.28 .118 A
IL1B rs1071676 106042060 2 .189 G>C 0.30 .863 A
IL1B rs1143643 106042929 2 .383 G>A 1.51 .469 A
IL1B rs1143642 106043180 2 .082 C>T 2.87 .238 A
IL1B rs1143634 106045017 2 .187 C>T 0.51 .774 A
IL1B rs1143633 106045094 2 .392 G>A 2.85 .241 A
IL1B rs1143630 106046282 2 .115 C>A 0.64 .728 A
IL1B rs3917356 106046990 2 .450 A>G 0.29 .864 A
IL1B rs1143629 106048145 2 .389 T>C 1.03 .599 A
IL1B rs1143627 106049014 2 .397 T>C 1.15 .562 A
IL1B rs16944 106049494 2 .386 G>A 0.64 .726 A
IL1B rs1143623 106050452 2 .277 G>C 2.10 .350 A
IL1B rs13032029 106055022 2 .448 C>T 0.09 .958 A
IL1R1 rs949963 96533648 2 .223 G>A 1.94 .379 A
IL1R1 rs2228139 96545511 2 .053 C>G 1.66 .436 A
IL1R1 rs3917320 96556738 2 .047 A>C 0.90 .637 A
IL1R1 rs2110726 96558145 2 .317 C>T FE .007 D
IL1R1 rs3917332 96560387 2 .187 T>A 2.25 .324 A
IL1R2 rs4141134 96370336 2 .362 T>C 0.77 .680 A
IL1R2 rs11674595 96374804 2 .247 T>C 1.36 .507 A
IL1R2 rs7570441 96380807 2 .408 G>A 1.70 .428 A
IL2 rs1479923 119096993 4 .308 C>T 1.89 .388 A
IL2 rs2069776 119098582 4 .184 T>C n/a n/a n/a
IL2 rs2069772 119099739 4 .241 A>G 0.19 .911 A
IL2 rs2069777 119103043 4 .047 C>T 5.21 .074 A
IL2 rs2069763 119104088 4 .277 T>G 0.85 .653 A
IL4 rs2243248 127200946 5 .086 T>G 1.06 .588 A
IL4 rs2243250 127201455 5 .269 C>T n/a n/a n/a
IL4 rs2070874 127202011 5 .245 C>T n/a n/a n/a
IL4 rs2227284 127205027 5 .387 C>A n/a n/a n/a
IL4 rs2227282 127205481 5 .390 C>G n/a n/a n/a
IL4 rs2243263 127205601 5 .124 G>C 1.90 .386 A
IL4 rs2243266 127206091 5 .237 G>A n/a n/a n/a
IL4 rs2243267 127206188 5 .237 G>C n/a n/a n/a
IL4 rs2243274 127207134 5 .261 G>A n/a n/a n/a
IL6 rs4719714 22643793 7 .255 A>T 1.59 .452 A
IL6 rs2069827 22648536 7 .069 G>T 0.84 .658 A
IL6 rs1800796 22649326 7 .134 G>C n/a n/a n/a
IL6 rs1800795 22649725 7 .285 C>G 3.35 .187 A
IL6 rs2069835 22650951 7 .130 T>C n/a n/a n/a
IL6 rs2066992 22651329 7 .091 G>T 2.37 .306 A
IL6 rs2069840 22651652 7 .333 C>G 3.19 .203 A
IL6 rs1554606 22651787 7 .319 T>G 1.36 .507 A
IL6 rs2069845 22653229 7 .319 G>A 1.36 .507 A
IL6 rs2069849 22654236 7 .024 C>T 2.65 .266 A
IL6 rs2069861 22654734 7 .056 C>T 2.06 .357 A
IL6 rs35610689 22656903 7 .259 A>G 2.03 .363 A
IL8 rs4073 70417508 4 .455 T>A 0.35 .838 A
IL8 rs2227306 70418539 4 .366 C>T 1.06 .588 A
IL8 rs2227543 70419394 4 .368 C>T 0.61 .738 A
IL10 rs3024505 177638230 1 .129 C>T 2.85 .241 A
IL10 rs3024498 177639855 1 .204 A>G 0.86 .650 A
IL10 rs3024496 177640190 1 .421 T>C 0.79 .674 A
IL10 rs1878672 177642039 1 .416 G>C 0.08 .960 A
IL10 rs3024492 177642438 1 .161 A>T n/a n/a n/a
IL10 rs1518111 177642971 1 .303 G>A 2.04 .361 A
IL10 rs1518110 177643187 1 .301 G>T 1.82 .402 A
IL10 rs3024491 177643372 1 .408 T>G 0.08 .961 A
IL13 rs1881457 127184713 5 .210 A>C 2.20 .332 A
IL13 rs1800925 127185113 5 .233 C>T 5.14 .077 A
IL13 rs2069743 127185579 5 .019 A>G 2.62 .270 A
IL13 rs1295686 127188147 5 .265 G>A 7.89 .019 A
IL13 rs20541 127188268 5 .212 C>T 2.18 .337 A
IL17A rs4711998 51881422 6 .346 G>A 5.02 .081 A
IL17A rs8193036 51881562 6 .327 T>C 1.77 .412 A
IL17A rs3819024 51881855 6 .372 A>G 0.52 .772 A
IL17A rs2275913 51882102 6 .361 G>A 1.29 .525 A
IL17A rs3804513 51884266 6 .023 A>T FE .544 A
IL17A rs7747909 51885318 6 .217 G>A 2.70 .259 A
NFKB1 rs3774933 103645369 4 .409 T>C 1.139 .566 A
NFKB1 rs170731 103667933 4 .397 T>A 2.89 .576 A
NFKB1 rs17032779 103685279 4 .023 T>C 0.00 .968 A
NFKB1 rs230510 103695201 4 .366 T>A 1.37 .504 A
NFKB1 rs230494 103706005 4 .477 A>G 1.01 .604 A
NFKB1 rs4648016 103708706 4 .017 C>T 0.09 .765 A
NFKB1 rs4648018 103709236 4 .025 G>C 0.02 .881 A
NFKB1 rs3774956 103727564 4 .479 C>T 1.05 .591 A
NFKB1 rs10489114 103730426 4 .025 A>G 0.02 .881 A
NFKB1 rs4648068 103737343 4 .366 A>G 2.42 .299 A
NFKB1 rs4648095 103746914 4 .052 T>C 0.00 .977 A
NFKB1 rs4648110 103752867 4 .205 T>A 1.50 .472 A
NFKB1 rs4648135 103755716 4 .060 A>G 0.07 .792 A
NFKB1 rs4648141 103755947 4 .188 G>A 3.02 .221 A
NFKB1 rs1609798 103756488 4 .337 C>T 1.02 .600 A
NFKB2 rs12772374 104146901 10 .157 A>G 0.10 .949 A
NFKB2 rs7897947 104147701 10 .229 T>G 0.67 .717 A
NFKB2 rs11574849 104149686 10 .085 G>A 0.47 .792 A
NFKB2 rs1056890 104152760 10 .317 C>T 2.47 .291 A
TNFA rs2857602 31533378 6 .341 T>C 0.69 .708 A
TNFA rs1800683 31540071 6 .390 G>A 1.85 .397 A
TNFA rs2239704 31540141 6 .335 G>T 0.42 .810 A
TNFA rs2229094 31540556 6 .278 T>C 1.71 .426 A
TNFA rs1041981 31540784 6 .386 C>A 1.68 .433 A
TNFA rs1799964 31542308 6 .224 T>C 2.34 .311 A
TNFA rs1800750 31542963 6 .016 G>A FE .712 A
TNFA rs1800629 31543031 6 .149 G>A 3.29 .193 A
TNFA rs1800610 31543827 6 .100 C>T 0.71 .702 A
TNFA rs3093662 31544189 6 .074 A>G 0.68 .712 A

A = additive model, Chr = chromosome, D = dominant model, IFNG = interferon gamma, IL = interleukin, MAF = minor allele frequency, n/a = not assayed because SNP violated Hardy-Weinberg expectations (p<0.001), NFKB = nuclear factor kappa beta, R = recessive model, SNP= single nucleotide polymorphism, TNFA = tumor necrosis factor alpha

Single nucleotide polymorphisms (SNPs) that violated Hardy-Weinberg expectations are denoted in italics in the MAF column.