Table 3.
Percentage nucleotide/amino acid identity for the envelope genes among Culexflavivirus isolates from different countries and genotypes
| GENOTYPE 1 | GENOTYPE 2 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| China | Japan | Indonesia | Texas | Iowa | Mexico | Guatemala | Trinidad | Uganda | ||
| China | -- | 94.6 | 94.8 | 94.5 | 94.4 | 89.4 | 89.7 | 89.6 | 90.2 | |
| Japan | 98.6 | -- | 97.5 | 97.4 | 97.4 | 89.1 | 89.3 | 89.3 | 90.2 | |
| GEN 1 | Indonesia | 98.4 | 99.3 | -- | 97.4 | 97.3 | 89.9 | 90.1 | 90.1 | 90.9 |
| Texas | 98.6 | 99.5 | 99.3 | -- | 99.6 | 89.8 | 89.9 | 89.5 | 90.6 | |
| Iowa | 98.6 | 99.5 | 99.3 | 100 | -- | 90 | 90.2 | 89.8 | 90.8 | |
| Mexico | 97.9 | 97.4 | 97.2 | 97.4 | 97.4 | -- | 99.2 | 98.4 | 97.9 | |
| Guatemala | 97.9 | 97.4 | 97.2 | 97.4 | 97.4 | 100 | -- | 98.4 | 97.9 | |
| GEN 2 | Trinidad | 97.9 | 97.4 | 97.2 | 97.4 | 97.4 | 100 | 100 | -- | 98 |
| Uganda | 97.9 | 97.4 | 97.2 | 97.4 | 97.4 | 99.5 | 99.5 | 99.5 | -- | |
Percentage nucleotide and amino acid homology between and amongst genotypes and countries; nucleotide divergence is displayed in bold type in upper triangle, amino acid homology is displayed in regular type in lower triangle. Alignments were performed using the following CxFV isolates: SDDM06-11 (China), NIID-21-2 (Japan), Surabaya (Indonesia), TX 24518 (Texas), 380 (Iowa) belonging to Genotype 1 and CxFV-Mex07 (Mexico), Izabal (Guatemala), TR3116 (Trinidad) and Uganda08 (Uganda) belonging to Genotype 2.