Table 5.
Nucleotide and amino acid of ORF sequence comparison (% sequence identity) of strain SDDM06-11 with selected CxFV isolates
| SDDM06-11 | C | PrM | E | NS1 | NS2a | NS2b | NS3 | NS4a | NS4b | NS5 | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 417(139)a | 429 (143) | 1281 (427) | 1107 (369) | 690 (230) | 381 (127) | 1779 (593) | 567 (189) | 771 (257) | 2667 (889) | 10089 (3363) | |
| Tokyo | 94.5 (95.0)b | 95.3 (98.6) | 94.6 (98.6) | 94.7 (99.2) | 98.3 (97.8) | 96.9 (94.5) | 94.3 (97.5) | 94.0 (98.4) | 94.0 (97.3) | 94.7 (98.7) | 94.9 (98.0) |
| NIID-21-2 | 94.7 (95.0) | 95.6 (99.3) | 94.6 (98.6) | 94.8 (99.2) | 98.3 (97.8) | 96.9 (94.5) | 94.5 (97.6) | 94.0 (98.4) | 94.0 (97.3) | 95.0 (99.1) | 95.0 (98.2) |
| Iowa07 | 95.0 (94.2) | 95.6 (99.3) | 95.0 (98.8) | 94.8 (99.2) | 98.6 (98.3) | 96.6 (94.5) | 94.5 (97.5) | 94.0 (98.4) | 94.2 (97.3) | 95.1 (99.3) | 95.1 (98.2) |
| HOU24518 | 95.0 (95.0) | 94.6 (98.6) | 94.5 (98.6) | 94.4 (99.2) | 98.3 (98.3) | 96.1 (95.3) | 94.2 (97.5) | 94.4 (99.5) | 94.4 (96.9) | 94.6 (98.7) | 94.8 (98.1) |
| CxFV-Mex07 | 91.8 (89.9) | 92.8 (98.6) | 89.4 (97.9) | 91.3 (98.1) | 94.8 (93.9) | 92.4 (93.7) | 88.8 (96.5) | 87.5 (96.3) | 88.8 (95.7) | 89.8 (97.5) | 90.2 (96.6) |
| UGANDA08 | 92.3 (91.4) | 93.0 (97.9) | 90.2 (97.9) | 92.0 (98.1) | 94.8 (94.3) | 92.9 (94.5) | 89.3 (96.5) | 88.4 (96.3) | 87.7 (94.2) | 89.8 (97.2) | 90.5 (96.5) |
a Nucleotide number were ahead and amino acid number shown in brackets.
b Percent nucleotide sequence homology were ahead and amino acid sequence homology shown in brackets.