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. 2012 Apr 11;116(18):5372–5383. doi: 10.1021/jp301726s

Table 1. All Residues in the Set X (i.e., solvent-accessible in the intermediates but inaccessible in the simulated crystal conformations, see text) That Belong to the TTDIa.

  “int.-solv.-acc.” max SASArel (OfCC,IfCC) [%]
successful SCAM predictions I61, I213, M395? 3.5, 2.3, 13.1
unsuccessful SCAM predictions V209? 4.8
new SCAM predictions L54, V62, L66?, V198, A205 2.1, 0.0, 3.7, 2.7, 0.8
a

Solvent-accessible residues predicted from the simulations are listed as “successful SCAM prediction” if the position is known (e.g., from published SCAMs5,54,55) to be solvent accessible in GltPh or its corresponding site of an EAAT homologue; it is identified as “unsuccessful SCAM prediction” if this position has been tested, e.g., with SCAM but not found to be solvent accessible so far;54 it is listed in “new SCAM predictions” if to date, to the best of our knowledge, no solvent-accessibility measurements have been performed on this residue in GltPh or its EAAT counterpart. Residues marked as ? also showed some solvent accessibilty in the end conformations, measuring one or more average water molecules within 3 Å of the residue’s side chain (see Figure SI7, Supporting Information). In the “max SASArel” column, for each residue in the set X we list the maximum SASArel values observed in the OfCC and IfCC.