Table 1.
Primers for HTR2C amplification | ||||
---|---|---|---|---|
forward | reverse | template | size (bp) | |
Exon 1 | TTTAGCCCAAGAGAGCGATG | TAGGGTCTGGGCTAGCAATG | genomic | 637 |
Exon 2 | TTCTGGCACTAATGAATATCAGC | CATGGTAAGTCAATAACGTCAAATG | genomic | 315 |
Exon 3 | CTGCATCCCCATTATGAGC | TGGACCTTTCCTTGCATCTC | genomic | 300 |
Exon 4 | AAATGAAAAATCTATCCTCTTTGC | GGCAGATTGAGGCAAATATAGC | genomic | 413 |
Exon 5A | ACTCTGGGGACAGGAGGAAG | CTGCCATGATGACGAGAATG | genomic | 400 |
Exon 5B | ATGGTGGACGCTTCAAATTC | TGCGCACATTCAATTACCTC | genomic | 363 |
Exon 6 | GCCCTAGAAAAGGCAAAATG | TAGCCGCTGCAATTCTACTG | genomic | 463 |
Exon 7A | ACCCTTCCGTGTGCTGTAAC | CAAGCCTTCCCACAAAGAAC | genomic | 519 |
Exon 7B | GAAAGCGTCGAAAGTCCTTG | TCAACATTTTTGCATCGAAC | genomic/cDNA | 695 |
HTR2CX1-2 | TTTAGCCCAAGAGAGCGATG | TTGAAGGATGGGGATTCTTG | cDNA | 653 |
HTR2CX2-5 | GTAGGCCAAGAATCCCCATC | ACCAATAGGCCAATCAGGTG | cDNA | 263 |
HTR2CX4-5 | CATGGTGAACCTGAGGAAAG | GCAGAGACAGTGGCATGA | cDNA | 335 |
HTR2CX5-7 | CATGCCACTGTCTCTGCTTG | TGTTGTTGACGAACACCTTG | cDNA | 299/204 |
HTR2CNR | TTGCCCAAACAATAGCAATC | cDNA | ||
HTR2CL | TTCTACAGCGTCCATCATGC | CACCTAAAGAAATTGCCCAAAC | qRT-PCR | 143 |
HTR2CS | TGTCATGCCACTGTCTCTGC | ACACCGATCCAGCGAAATAG | qRT-PCR | 145 |
A list of primers used for PCR amplification of HTR2C exons from both genomic DNA, and cDNA prepared from a transcript pool. Primers were selected following comparison of human and porcine reference sequences to define the putative coding regions of the pig genome