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. 2012 May 11;7(5):e35741. doi: 10.1371/journal.pone.0035741

Table 3. Validity of new method compared to alternative methods.

Independent Samples Dependent Samples
Method Sensitivity Specificity Sample Sizes (Inline graphic) Sensitivity Specificity Sample Sizes (Inline graphic = Inline graphic)
a) very informative variables
New Method: 1.00 0.86 12; 10 1.00 0.82 11
T-Test without Inline graphic-adjustment: 1.00 0.95 1.00 0.95
T-Test with Inline graphic-adjustment: 0.90 1.00 0.90 1.00
Random Forest: 0.30 1.00 0.50 1.00
New Method: 1.00 0.78 14; 16 1.00 0.69 15
T-Test without Inline graphic-adjustment: 1.00 0.95 1.00 0.95
T-Test with Inline graphic-adjustment: 1.00 1.00 1.00 1.00
Random Forest: 0.20 1.00 0.20 1.00
New Method: 1.00 0.56 30; 30 1.00 0.41 30
T-Test without Inline graphic-adjustment: 1.00 0.93 1.00 0.96
T-Test with Inline graphic-adjustment: 1.00 1.00 1.00 1.00
Random Forest: 0.50 1.00 0.30 1.00
b) semi-informative variables
New Method: 1.00 0.87 12; 10 1.00 0.81 11
T-Test without Inline graphic-adjustment: 1.00 0.96 1.00 0.95
T-Test with Inline graphic-adjustment: 0.00 1.00 0.50 1.00
Random Forest: 0.70 0.99 0.30 1.00
New Method: 1.00 0.74 14; 16 1.00 0.67 15
T-Test without Inline graphic-adjustment: 1.00 0.96 1.00 0.95
T-Test with Inline graphic-adjustment: 0.70 1.00 0.60 1.00
Random Forest: 1.00 0.90 0.30 1.00
New Method: 1.00 0.59 30; 30 1.00 0.39 30
T-Test without Inline graphic-adjustment: 1.00 0.95 1.00 0.96
T-Test with Inline graphic-adjustment: 0.90 1.00 1.00 1.00
Random Forest: 1.00 0.98 1.00 0.92
c) non-informative variables
New Method: 0.10 0.87 12; 10 0.10 0.81 11
T-Test without Inline graphic-adjustment: 0.00 0.96 0.00 0.95
T-Test with Inline graphic-adjustment: 0.00 1.00 0.00 1.00
Random Forest: 0.00 0.98 0.00 1.00
New Method: 0.40 0.75 14; 16 0.30 0.69 15
T-Test without Inline graphic-adjustment: 0.00 0.95 0.00 0.95
T-Test with Inline graphic-adjustment: 0.00 1.00 0.00 1.00
Random Forest: 0.10 0.97 0.00 1.00
New Method: 0.40 0.57 30; 30 0.70 0.40 30
T-Test without Inline graphic-adjustment: 0.10 0.95 0.00 0.96
T-Test with Inline graphic-adjustment: 0.00 1.00 0.00 1.00
Random Forest: 0.00 1.00 0.00 1.00

Validity of the measure of relevance for the two sample-problem evaluated by sensitivity and specificity. For comparisons we used the a multiple-testing-adjusted approach based on the t-test and the tree-based Random Forest approach. For informative or semi-informative metric data sensitivity showed good concordance with multiple testing without Inline graphic-adjustment. This was irrespective of sample design and sample size. Specificity did not show as good results as sensitivity (for more details see text). However, the specificity results were better than those obtained from t-test without multiple-testing-adjustment.