Table 1.
The characteristics of chromodomain-containing Gypsy LTR retrotransposons from Selaginella moellendorffii.
| Element name | Element size [bp] | Intact copies | LTRs size [bp] | LTRs identity [%] | TSD | ITR |
|---|---|---|---|---|---|---|
| SM1-Galahad* | ~7500 | ND | 1076/1146 | 90.2 | ND | TG⋯CA |
| SM2-Galahad | 7353 | + | 919 | 99.7 | CCTAT⋯CCTAT | TGT⋯ACA |
| SM-Fogey | 4916 | + | 233 | 98.7 | TGCCC⋯TGCCC | TG⋯CA |
| SM-Diluvium | 5038 | + | 112 | 97.3 | GCGTA⋯GCGTA | TG⋯CA |
| SM-Cranky | 5594 | — | 217 | 98.6 | GTTTCT⋯GTTTCT | TG⋯CA |
*SM1-Galahad was reconstructed based on a number of sequences; TSD: terminal site duplications; ITR: dinucleotide inverted repeat; ND: not detected.