Table 3.

Performance analysis for each algorithm using the default settings in histone modification datasets based on unbiased AUCROC statistic

Datasets/Algorithms	CCAT	ChIPDiff	ERANGE	FindPeaks	FSeq	MACS	PeakSeq	Qeseq	QuEST	RSEG	SICER	SISSRS	SWEMBL	TPIC	W-ChiPeaks
MYO.H3k27me3.GM.VDA	0.8232	0.8331	0.5038	0.8427	0.7638	0.6583	0.6500	0.8378	0.5011	0.8591	0.5000	0.5089	0.8124	0.8025	0.5085
MYO.H3k36me3.GM.VDA	0.6223	0.6696	0.5000	0.4610	0.6140	0.6148	0.5483	0.6722	0.5000	0.6217	0.6212	0.5002	0.6037	0.6200	0.5000
MYO.H3k27me3.GM	0.8002	0.7879	0.5003	0.7987	0.7931	0.5980	0.6229	0.7991	0.5000	0.7991	0.5000	0.5010	0.7998	0.7993	0.5046
MYO.H3k27me3.MT	0.7355	0.7340	0.5000	0.7350	0.7128	0.5394	0.5590	0.7319	0.5000	0.7354	0.5000	0.5002	0.7362	0.7355	0.5015
ES.H3K4me3	0.8413	0.8426	0.8088	0.8738	0.9742	0.9630	0.4951	0.9940	0.6697	0.9972	0.9970	0.5000	0.9032	0.9814	0.8373
ES.H3K27me3	0.5027	0.9172	0.5826	1.0000	0.8366	0.6757	0.7294	0.8703	0.5551	0.9454	0.8853	0.5000	0.8747	0.8607	0.7185