Table 3. Distribution of simple sequence repeat (SSR) loci in the Sesamum indicum cp genome.
Base | Length | No. SSRs | Coodinated Basepairs* |
A | 10 | 6 | 239−248, 4,381−4,390, 8,578−8,587, 72,464−72,473, 121,267−121,276, 135,512−135,521 |
C | 10 | 2 | 51,903−51,912, 66,525−66,534 |
C | 11 | 1 | 36,699−36,709 |
T | 10 | 11 | 13,440−13,449, 18,896−18,905(rpoC2), 43,915−43,924, 44,799−44,808, 49,156−49,165, 55,417−55,426(atpB), 59,974−59,983, 71,246−71,255, 102,974−102,983, 113,873−113,882, 126,393−126,402(ycf1) |
T | 11 | 1 | 81,161−81,171 |
AT | 10 | 1 | 20,268−20,277(rpoC2) |
AT | 12 | 1 | 42,984−42,995 |
TA | 10 | 1 | 31,905−31,914 |
TA | 12 | 1 | 47,040−47,051 |
ATA | 12 | 1 | 55,471−55,482 |
TTA | 12 | 1 | 23,018−23,029 |
TTC | 12 | 1 | 35,684−35,695(psbC) |
The coordinated basepairs are the nucleotide number positions starting at the IRa/LSC junction (Figure 1). The underline represents the SSR in the CDS and the bold numbers represent the shared SSR with Olea chloroplast genome.