Table 1. Variation of chromosome 3 DICP D1-D2 cDNA amplicons from reference genomic sequences.
| cDNA Amplicon (GenBank) |
Best Genomic Reference D1a |
Differences with Genomic Reference D1b |
Gaps with Genomic Reference D1c |
Best Genomic Reference D2a |
Differences with Genomic Reference D2b |
Gaps with Genomic Reference D2c |
|---|---|---|---|---|---|---|
| 2506 (JN416864) |
Novel | n.a. | n.a. | Dicp3n262 | 8 | 0 |
| 2507 (JN416865) |
Dicp3l262 | 9 | 0 | Dicp3s262 | 2 | 0 |
| 2508 (JN416866) |
Novel | n.a. | n.a. | Novel | n.a. | n.a. |
| 2590 (JN416867) |
Dicp3f262 | 1 | 0 | Dicp3f262 | 0 | 0 |
| 2510 (JN416868) |
Novel | n.a. | n.a. | Novel | n.a. | n.a. |
| 2529 (JN416869) |
Dicp3p262 | 23 | 0 | Dicp3k262 | 6 | 0 |
| 2530 (JN416870) |
Dicp3l262 | 20 | 1 | Dicp3l262 | 3 | 0 |
| 2531 (JN416871) |
Novel | n.a. | n.a. | Dicp3k262 | 6 | 0 |
| 2532 (JN416872) |
Dicp3l262 | 25 | 1 | Dicp3p262 | 9 | 0 |
| 2533 (JN416873) |
Dicp3l262 | 8 | 0 | Dicp3t262 | 16 | 0 |
| 2534 (JN416874) |
Dicp3p262 | 23 | 0 | Dicp3k262 | 5 | 0 |
| 2535 (JN416875) |
Novel | n.a. | n.a. | Novel | n.a. | n.a. |
| 2536 (JN416876) |
Dicp3p262 | 28 | 0 | Dicp3p262 | 5 | 0 |
| 2537 (JN416877) |
Dicp3e262 | 0 | 0 | Dicp3e262 | 0 | 0 |
| 2538 (JN416878) |
Novel | n.a. | n.a. | Novel | n.a. | n.a. |
a
DICP ectodomains encoded by the reference genome sequence (scaffold 262) with the highest similarity to DICP cDNA amplicons in Fig 3.
b
Number of amino acid differences between the ectodomains encoded by the cDNA amplicon and the reference sequence.
c
Number of gaps in the alignment between the ectodomains encoded by the cDNA amplicon and the reference sequence.