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. 2012 Jan 6;29(6):1557–1568. doi: 10.1093/molbev/mss001

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© The Author(s) 2012. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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FIG. 3. — Phylogenomic position of Collodictyon inferred from 124 genes under the CAT mixture model in PhyloBayes v3.2. Branches that received 1.00 PP are marked by filled circles. The branch length of Entamoeba is shortened by 50% to save space. (A) Tree topology constructed with 79 taxa from the saved 18,000 trees after discarding the first 6,000 cycles as burn-in (maxdiff = 0.137). Missing data for each taxon is shown as a color barplot (left bar: missing number of genes; right bar: missing percentage of characters). Bars marked by “*” indicate the missing percentage of characters is over 60% of the full-length alignment. (B) Tree topology constructed with 77 taxa (i.e., two Malawimonas excluded) from the saved 16,000 trees after discarding first 8,000 cycles as burn-in (maxdiff = 0.083). CCTH is the abbreviation of Cryptophyta, Centrohelida, Telonemia, and Haptophyta. Additional statistical support values for the main nodes in the tree marked by capital letters in boxes are listed in table 1.