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. 2012 Jan 6;29(6):1557–1568. doi: 10.1093/molbev/mss001

Table 2.

AU Test of Tree Topologies.

P Valueb
Rank Tree Topology Based on a Sample of 79 Taxaa Allc 20%d
1 (((Opst,Amoe),(Mala,Coll)),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.982 0.995
2 (((Opst,Amoe),Coll),((Exca,Mala),(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.064 0.045
3 (((Amoe,(Mala,Coll)),Opst),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.067 0.006
4 (((Opst,(Mala,Coll)),Amoe),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.009 0.005
5 (((Opst,Mala),(Coll,Amoe)),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.007 0.010
6 (((Opst,Coll),(Mala,Amoe)),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.006 0.006
7 ((((Opst,Amoe),Coll),Mala),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.005 0.014
8 (((Opst,(Coll,Amoe)),Mala),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.003 2 × 10−04
9 ((((Opst,Coll),Amoe),Mala),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.002 0.001
10 (((Opst,Amoe),Mala),((Exca,Coll),(Plan,(SAR,((Cryp,Hapt),TelRap))))) 3 × 10−04 7 × 10−05
11 (((Opst,Amoe),Mala),(Exca,((Plan,Coll),(SAR,((Cryp,Hapt),TelRap))))) 2 × 10−04 8 × 10−05
12 (((Opst,Amoe),Mala),(Exca,(Plan,(SAR,((Cryp,Hapt),(Coll,TelRap)))))) 1 × 10−04 0.001
13 (((Opst,Amoe),Mala),(Exca,(Plan,(SAR,(((Cryp,Coll),Hapt),TelRap))))) 8 × 10−05 8 × 10−06
14 (((Opst,Amoe),Mala),(Exca,(Plan,(SAR,((Cryp,(Coll,Hapt)),TelRap))))) 2 × 10−05 6 × 10−07
15 ((((Opst,Amoe),Coll),Mala),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 1 × 10−05 2 × 10−07
16 ((Opst,Amoe),((Exca,(Mala,Coll)),(Plan,(SAR,((Cryp,Hapt),TelRap))))) 6 × 10−15 5 × 10−14
17 ((Opst,Amoe),((Exca,Mala),Coll)),(Plan,(SAR,((Cryp,Hapt),TelRap))))) 4 × 10−12 3 × 10−11
P Valueb
Rank Tree Topology Based on a Sample of 77 Taxaa (i.e., two Malawimonas excluded) Allc 20%e
1 (((Opst,Amoe),Coll),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.532 0.614
2 (((Opst,Amoe),Coll),(Exca,(SAR,(Plan,((Cryp,Hapt),TelRap))))) 0.630 0.529
3 (((Opst,Coll),Amoe),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.071 0.046
4 (((Opst,Coll),Amoe),(Exca,(SAR,(Plan,((Cryp,Hapt),TelRap))))) 0.076 0.045
5 ((Opst,(Amoe,Coll)),(Exca,(Plan,(SAR,((Cryp,Hapt),TelRap)))) 0.284 0.040
6 ((Opst,(Amoe,Coll)),(Exca,(SAR,(Plan,((Cryp,Hapt),TelRap)))) 0.372 0.037
7 ((Opst,Amoe),((Exca,Coll),(Plan,(SAR,((Cryp,Hapt),TelRap))))) 0.001 0.001
8 ((Opst,Amoe),((Exca,Coll),(SAR,(Plan,((Cryp,Hapt),TelRap))))) 0.003 2 × 10−04
9 ((Opst,Amoe),(Exca,((Plan,Coll),(SAR,((Cryp,Hapt),TelRap))))) 2 × 10−06 4 × 10−07
10 ((Opst,Amoe),(Exca,((SAR,Coll),(Plan,((Cryp,Hapt),TelRap))))) 7 × 10−06 3 × 10−08
11 ((Opst,Amoe),(Exca,(Plan,(SAR,(((Cryp,Coll),Hapt),TelRap))))) 6 × 10−07 1 × 10−04
12 ((Opst,Amoe),(Exca,(SAR,(Plan,(((Cryp,Coll),Hapt),TelRap))))) 2 × 10−05 6 × 10−05
13 ((Opst,Amoe),(Exca,(Plan,(SAR,((Cryp,(Coll,Hapt)),TelRap))))) 6 × 10−09 7 × 10−39
14 ((Opst,Amoe),(Exca,(SAR,(Plan,((Cryp,(Coll,Hapt)),TelRap))))) 8 × 10−05 2 × 10−47
15 ((Opst,Amoe),(Exca,(Plan,(SAR,((Cryp,Hapt),(Coll,TelRap)))))) 1 × 10−74 5 × 10−51
16 ((Opst,Amoe),(Exca,(SAR,(Plan,((Cryp,Hapt),(Coll,TelRap)))))) 1 × 10−69 8 × 10−54
17 ((Opst,Amoe),(Exca,(Plan,((SAR,Coll),((Cryp,Hapt),TelRap))))) 2 × 10−63 7 × 10−40
18 ((Opst,Amoe),(Exca,(SAR,((Plan,Coll),((Cryp,Hapt),TelRap))))) 2 × 10−51 2 × 10−43
a

The abbreviation of major groups: Opst, Opisthokonta; Amoe, Amoebozoa; Exca, Excavata; Plan, Archaeplastida; SAR, Stramenopila + Alveolata + Rhizaria; Cryp, Guillardia + Plagioselmis; Hapt, Haptophyta; TelRap, Telonemia + Raphidiophrys; Mala, Malawimonas; and Coll, Collodictyon.

b

P values in which the topologies cannot be rejected at the 5% level of significance were underlined.

c

P values were calculated from the original alignment (i.e., no sites removed).

d

P values were calculated from the trimmed alignment with removal of the 20% fastest evolving sites (marked by gray rectangles in fig. 4A).

e

P values were calculated from the trimmed alignment (i.e., two Malawimonas excluded) with removal of the 20% fastest evolving sites (marked by gray rectangles in fig. 4B).