Table 2.

Details for the Molecular Markers Used in This Study.

Gene	Nuclear Gene Type	Length (bp)	% Missing seq. Dataa	Variable Sitesa	Number of Distinct Site Patternsa	Number of Allelesa,b	Proportion of Heterozygous Sitesa,c	Model	lnL 95% Highest Posterior Densityc	Number of Distinct Topologies in Posterior Distributiond
ABCA1	Intron	637	0.1	40	93	45/60	0.0025	GTR + G	−2307.2 to −2344.5	1,000
ADORA3	Exon	384	0.0	20	23	16/60	0.0017	HKY + G	−1194.4 to −1223.3	1,000
AXIN1	Mostly Exon	900	3.3	36	63	29/58	0.0016	GTR + I + G	−2187.3 to −2224.6	1,000
CFTR-Pair B	Mostly Intron	638	0.2	47	75	32/60	0.0028	GTR + G	−2139.8 to −2172.9	1,000
ENO	Mostly Intron	905	0.0	114	144	49/60	0.0044	GTR + G	−3386.7 to −3422.4	1,000
ERC2	Mostly Intron	796	3.4	28	102	39/58	0.0008	HKY + G	−2286.2 to −2319.5	1,000
FGA	Mostly Intron	635	0.0	93	79	31/60	0.0036	GTR + I	−2275.1 to −2322.3	1,000
LRPPRC-Pair B	Mostly Intron	784	0.1	37	103	38/60	0.0009	GTR + G	−2219.7 to −2254.6	1,000
LUC7L	Mostly Intron	700	6.7	20	81	36/56	0.0005	GTR	−1540.8 to −1583.7	1,000
SREBF2	Mostly Intron	695	7.1	37	121	40/56	0.0024	GTR + G	−2318.3 to −2351.9	1,000
VWF	Mostly Intron	813	0.0	89	113	45/60	0.0058	HKY + I + G	−3397.5 to −3435.2	1,000
ZNF202	Exon	849	0.4	27	82	42/60	0.0011	HKY + I + G	−1920.1 to −1955.2	1,000
mtDNA-COX2	Coding	684	10.0	135	442	30/30d	n/a	HKY + I + G	−11195.7 to −11220.2	768d
mtDNA-CYTB	Coding	1,140	6.7	367	442	30/30d	n/a	HKY + I + G	−11195.7 to −11220.2	768d
Total		10,560		1,087

Note.—GTR, general time reversible; HKY, Hasegawa–Kishino–Yano; n/a, not applicable.

^aBased solely on the Microcebus sequence data.

^bThe number in the denominator indicated the total number of Microcebus gene copies in each data set.

^cThis proportion is calculated from the total number of cells in the unphased data matrix (i.e., number of individuals × length in bp).

^dBased on the sampled posterior distribution of 1,000 trees from Bayesian phylogenetic analysis performed in MrBayes.